TasahiiCBS2479

What was searched

Routing

Whole phylum. No curated family covers this lineage, so every family of the genome's phylum was searched. Family labels are less reliable here.

Families searched

Basidiomycota:HD, Basidiomycota:PR, Basidiomycota:MAT, Basidiomycota:Aalpha, Basidiomycota:Abeta, Basidiomycota:Balpha, Basidiomycota:Bbeta, Basidiomycota:aLocus, Basidiomycota:bLocus

Genetic code

1

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Families searched but not called

Pheromone-receptor arrays

Receptor arrays occur for both mating and non-mating STE3-like receptors (the study found arrays holding paralogs beside the mating receptors in Coprinopsis cinerea and Schizophyllum commune), so array membership does not establish that a locus is a mating receptor. receptor_array_support is a flag on the evidence behind an array; it never changes a call, its confidence or its verification label. receptor_cassette_* fields describe pheromone-precursor cassette structure (2 or more strict-CAAX ORFs within 5 kb of a receptor locus; class C when that many of those ORFs also carry tblastn precursor homology). They are descriptive only: the CAAX scan is also what admits a PR call, so cassettes are circular as confirmation; own-species curated precursors are a self-hit for class C; tandem receptors may be merged into one locus. They never change a call, tier, label, confidence or count.

Withheld candidate loci 239

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (234); too few of the family's genes found (5).

Provenance

Genome file

TasahiiCBS2479.genome.fasta

Assembly

78 contigs · 24.5 Mb · N50 1.7 Mb

Genome SHA-256

b1083239065d71d5ab93232d77f99cdbfbb4a30949d9e37bc8fff8208f808e34

MATPredict

0.8.1 (v0.8.1, 3a62e6302b)

Database

86f18d232e4fe95d · 185 records

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Parameters

phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'genus', 'routing_taxid': 1759442, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1759442', 'routed_by': 'family taxid 1759442 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0

Run started

2026-11-07T02:47:14Z

Run time

170 s

Files

detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.