MATPredict · mating-type report

Pstriiformisfsp.triticiPST130

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:43 UTC by MATPredict 0.8.1

Result

Mating-type loci

undeterminedhigh confidenceundeterminedhigh confidence

Called loci 2

undetermined rustHD family · Basidiomycota

high confidence
Gene order of the undetermined locus on JAHLQU010000128undetermined locus: genes from left to right on JAHLQU010000128, 40,291 to 44,238: bE (core MAT gene, minus strand); bW (core MAT gene, plus strand).40 kb41 kb42 kb43 kb44 kb← 40.0 kb more to contig endcalled locusbE: core MAT gene, 40,291–41,748 (-), identity 82.5%, search hit onlybEbW: core MAT gene, 42,388–44,238 (+), identity 80.4%, search hit onlybW
Gene order on JAHLQU010000128. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on JAHLQU010000128, 39,991 to 44,538H4Q26_010468 40,291-41,748 (-): Homeodomain | domain-containing proteinH4Q26_010468H4Q26_010469 42,388-44,238 (+): Homeobox KN domain | domain-containing proteinH4Q26_010469
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
Location
JAHLQU010000128:40,291–44,238 · 3.9 kb
Own genes
JAHLQU010000128:40,291–44,238 · 3.9 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
40.3 kb
Region (samtools)
JAHLQU010000128:40291-44238

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
bEcore MAThit onlyDIAMOND, proteome82.5cov 100.0%5.3e-208571 bits40,291–41,748 -–1165861_pst-78_rustHD_b1H4Q26_010468
bWcore MAThit onlyDIAMOND, proteome80.4cov 100.0%3.8e-292796 bits42,388–44,238 +–1165861_pst-78_rustHD_b1H4Q26_010469

undetermined rustHD family · Basidiomycota

high confidence
Gene order of the undetermined locus on JAHLQU010000142undetermined locus: genes from left to right on JAHLQU010000142, 1,466,708 to 1,470,605: bE (core MAT gene, minus strand); bW (core MAT gene, plus strand).1,467 kb1,468 kb1,469 kb1,470 kb53.1 kb more to contig end →called locusbE: core MAT gene, 1,466,708–1,467,501 (-), identity 95.4%, search hit onlybEbW: core MAT gene, 1,468,606–1,470,605 (+), identity 86.5%, search hit onlybW
Gene order on JAHLQU010000142. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on JAHLQU010000142, 1,466,408 to 1,470,905H4Q26_008986 1,466,708-1,467,501 (-): unspecified productH4Q26_008986H4Q26_008987 1,467,593-1,468,126 (-): unspecified productH4Q26_008987H4Q26_008988 1,468,606-1,470,605 (+): Homeobox KN domain | domain-containing proteinH4Q26_008988
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
Location
JAHLQU010000142:1,466,708–1,470,605 · 3.9 kb
Own genes
JAHLQU010000142:1,466,708–1,470,605 · 3.9 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
53.4 kb
Region (samtools)
JAHLQU010000142:1466708-1470605

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
bEcore MAThit onlyDIAMOND, proteome95.4cov 49.1%2.2e-98285 bits1,466,708–1,467,501 -–1165861_pst-78_rustHD_b1H4Q26_008986
bWcore MAThit onlyDIAMOND, proteome86.5cov 98.0%4.9e-288788 bits1,468,606–1,470,605 +–1165861_pst-78_rustHD_b1H4Q26_008988

Withheld candidate loci 13

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (13).

Show the 13 withheld loci

Withheld loci (13)

familylocationidiomorph genesmodelledreason
rustHDJAHLQU010000142:1,419,747–1,421,128undeterminedbE1fewer than 2 genes could be modelled
rustHDJAHLQU010000154:358,555–358,653undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000154:1,740,902–1,741,027undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000146:1,036,979–1,037,122undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000146:1,875,508–1,875,759undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000055:48,098–48,349undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000150:2,475,158–2,475,400undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000150:2,624,872–2,625,129undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000059:56,939–57,145undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000084:78,974–79,081undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000107:541,745–542,293undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000030:2,781–3,020undeterminedbW0fewer than 2 genes could be modelled
rustHDJAHLQU010000105:91,668–91,820undeterminedbW0fewer than 2 genes could be modelled

Provenance

Genome file
Pstriiformisfsp.triticiPST130.genome.fasta
Assembly
155 contigs · 85.5 Mb · N50 1.4 Mb
Genome SHA-256
d1dffb43e7a8369f5944590b11312cea42e838ac99b2ff311fbaafb68f062c99
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'genus', 'routing_taxid': 5262, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 5262', 'routed_by': 'family taxid 5262 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:42:53Z
Run time
33 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits