Pstriiformisfsp.triticiPST130 Puccinia striiformis f. sp. tritici PST-130

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_rustHD_0: undetermined Basidiomycota:rustHD, confidence high, JAHLQU010000128:40291-44238

MATPredictFungiDBbE (core_MAT) JAHLQU010000128:40291-41748 - identity 82.5bEbW (core_MAT) JAHLQU010000128:42388-44238 + identity 80.4bWH4Q26_010468 40291-41748 -: Homeodomain | domain-containing proteinH4Q26_010468H4Q26_010469 42388-44238 +: Homeobox KN domain | domain-containing proteinH4Q26_010469H4Q26_010470 45993-47718 -: SET domain | domain-containing proteinH4Q26_010470H4Q26_010471 48050-48880 +: unspecified productH4Q26_01047136 kb38 kb40 kb42 kb44 kb46 kb48 kbJAHLQU010000128
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bEcore_MAT40291-41748 -annotatedH4Q26_010468Homeodomain | domain-containing proteinH4Q26_010468 covers 100% of it on the same strand
bWcore_MAT42388-44238 +annotatedH4Q26_010469Homeobox KN domain | domain-containing proteinH4Q26_010469 covers 100% of it on the same strand

Basidiomycota_rustHD_1: undetermined Basidiomycota:rustHD, confidence high, JAHLQU010000142:1466708-1470605

MATPredictFungiDBbE (core_MAT) JAHLQU010000142:1466708-1467501 - identity 95.4bEbW (core_MAT) JAHLQU010000142:1468606-1470605 + identity 86.5bWH4Q26_008986 1466708-1467501 -: unspecified productH4Q26_008986H4Q26_008987 1467593-1468126 -: unspecified productH4Q26_008987H4Q26_008988 1468606-1470605 +: Homeobox KN domain | domain-containing proteinH4Q26_008988H4Q26_008989 1472324-1473829 -: SET domain | domain-containing proteinH4Q26_008989H4Q26_008990 1474362-1475187 +: unspecified productH4Q26_0089901462 kb1464 kb1466 kb1468 kb1470 kb1472 kb1474 kbJAHLQU010000142
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bEcore_MAT1466708-1467501 -annotatedH4Q26_008986unspecified productH4Q26_008986 covers 100% of it on the same strand
bWcore_MAT1468606-1470605 +annotatedH4Q26_008988Homeobox KN domain | domain-containing proteinH4Q26_008988 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
H4Q26_0089871467593-1468126 -unspecified product