PmacacaeP2C Pneumocystis sp. macacae isolate P2C
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Ascomycota_PM_0: P Ascomycota:PM, confidence medium, CM030734:163887-174093
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| matMi | core_MAT | 163887-164027 - | partial | PMAC_001418 | unspecified product | PMAC_001418 overlaps 8% but on the opposite strand |
| matMc | core_MAT | 164243-165001 + | annotated | PMAC_001419 | HMG (high mobility group) box | domain-containing protein | PMAC_001419 covers 100% of it on the same strand |
| matPi | core_MAT | 173398-174093 + | annotated | PMAC_001421 | Homeobox KN domain | domain-containing protein | PMAC_001421 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| PMAC_001418 | 163693-163897 + | unspecified product |
| PMAC_001420 | 165649-173140 - | AAA domain (Cdc48 subfamily) | Clp amino terminal domain, pathogenicity island component | ANTH domain | ATPase family associated with various cellular activities (AAA) | AAA lid domain | I/LWEQ domain | C-terminal, D2-small domain, of ClpB protein | domain-containing protein |