MATPredict · mating-type report

Pdestructans20631-21

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:42 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on GL573182MAT1-1 locus: genes from left to right on GL573182, 101,497 to 114,844: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-2-1 (core MAT gene, minus strand); MAT1-1-5 (core MAT gene, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).105 kb110 kb115 kb← 100.8 kb more to contig endcalled locusCOX13: conserved flank, 101,497–102,191 (-), identity 72.5%, search hit onlyCOX13APN2: conserved flank, 102,490–104,727 (+), identity 88.6%, search hit onlyAPN2MAT1-2-1: core MAT gene, 106,203–107,092 (-), identity 32.9%, search hit onlyMAT1-2-1MAT1-1-5: core MAT gene, 107,767–107,925 (+), identity 31.667%, search hit onlyMAT1-1-5MAT1-1-1: core MAT gene, 109,337–110,382 (+), identity 43.8%, search hit onlyMAT1-1-1SLA2: conserved flank, 111,444–114,844 (-), identity 84.1%, search hit onlySLA2
Gene order on GL573182. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on GL573182, 100,829 to 115,512GMDG_01205 98,595-101,371 (+): Anaphase-promoting complex subunit 5 | domain-containing proteinGMDG_01205GMDG_01206 101,323-102,222 (-): Cytochrome c oxidase subunit VIa | domain-containing proteinGMDG_01206GMDG_01207 102,330-105,699 (+): DNA-(apurinic or apyrimidinic site) endonuclease 2GMDG_01207GMDG_01208 106,203-107,092 (-): HMG (high mobility group) box | domain-containing proteinGMDG_01208GMDG_01209 109,198-110,590 (+): Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinGMDG_01209GMDG_01210 110,244-115,043 (-): I/LWEQ domain | ANTH domain | domain-containing proteinGMDG_01210GMDG_01211 115,080-118,751 (+): Pleckstrin homology domain | domain-containing proteinGMDG_01211
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
GL573182:101,497–114,844 · 13.3 kb
Own genes
GL573182:101,497–114,844 · 13.3 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
5 of 6 gene hits
Nearest contig end
101.5 kb
Region (samtools)
GL573182:101497-114844
Idiomorph scores
  • MAT1-1 117.0
  • MAT1-2 63.9

Margin over the next idiomorph: 53.1

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome72.5cov 95.6%6.2e-55162 bits101,497–102,191 -–746128_a1163_MAT_MAT1-1GMDG_01206
APN2conserved flankhit onlyDIAMOND, proteome88.6cov 36.7%1.1e-237666 bits102,490–104,727 +–2903220_liq80xsp_MAT_combinedGMDG_01207
MAT1-2-1core MAThit onlyDIAMOND, proteome32.9cov 21.5%1.3e-1464 bits106,203–107,092 -–5141_unknown-1_MAT_MAT1-2GMDG_01208
MAT1-1-5core MAThit onlytblastn31.7cov 16.0%1.2e+0031 bits107,767–107,925 +–40559_sas56_MAT_MAT1-1none
MAT1-1-1core MAThit onlyDIAMOND, proteome43.8cov 38.3%5.7e-33117 bits109,337–110,382 +–1301501_voucher-215_MAT_MAT1-1GMDG_01209
GMDG_01210 (opposite strand)
SLA2conserved flankhit onlyDIAMOND, proteome84.1cov 99.3%< 1e-1801,367 bits111,444–114,844 -–107463_unknown-1_MAT_MAT1-2GMDG_01210

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATGL573221:115,254–117,494MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
Pdestructans20631-21.genome.fasta
Assembly
1,847 contigs · 30.7 Mb · N50 105.2 kb
Genome SHA-256
1e2827f1ebd647c62544d1865b54bed5f26358e0cb35371fb0b387a199bf0eab
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 46451, 'routing_taxid_rank': 'family', 'flags': ['high_N'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 46451', 'routed_by': 'family taxid 46451 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:41:12Z
Run time
85 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits