CposadasiiC735deltSOWgp Coccidioides posadasii C735 delta SOWgp

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, ACFW01000049:4371761-4384013

MATPredictFungiDBSLA2 (flanking_conserved) ACFW01000049:4371761-4375696 + identity 99.8SLA2MAT1-2-4 (core_MAT) ACFW01000049:4377590-4377712 - identity 34.146MAT1-2-4CIMG_00407 (core_MAT) ACFW01000049:4377811-4378350 - identity 98.9CIMG_00407MAT1-2-1 (core_MAT) ACFW01000049:4378795-4379924 + identity 100.0MAT1-2-1APN2 (flanking_conserved) ACFW01000049:4380656-4382712 - identity 91.1APN2COX13 (flanking_conserved) ACFW01000049:4383345-4384013 + identity 98.5COX13CPC735_058000 4361865-4367396 -: Transcription mediator complex subunit Med12 | SRB8 ARM-like domain | domain-containing proteinCPC735_058000CPC735_058010 4368326-4371224 +: Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinCPC735_058010CPC735_058020 4371565-4376644 +: endocytosis protein end4, putativeCPC735_058020CPC735_058030 4377811-4378350 -: hypothetical proteinCPC735_058030CPC735_058040 4378671-4380292 +: mating type HMG-box protein, putativeCPC735_058040CPC735_058050 4380656-4382712 -: DNA lyase Apn2, putativeCPC735_058050CPC735_058060 4383291-4384239 +: cytochrome c oxidase polypeptide VIa, mitochondrial precursor, putativeCPC735_058060CPC735_058070 4384390-4385968 -: Mannosyltransferase putative | domain-containing proteinCPC735_058070CPC735_058080 4386277-4387503 -: hypothetical proteinCPC735_0580804368 kb4370 kb4372 kb4374 kb4376 kb4378 kb4380 kb4382 kb4384 kb4386 kb4388 kbACFW01000049
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved4371761-4375696 +annotatedCPC735_058020endocytosis protein end4, putativeCPC735_058020 covers 100% of it on the same strand
MAT1-2-4core_MAT4377590-4377712 -novel—no FungiDB gene overlaps this MATPredict gene
CIMG_00407core_MAT4377811-4378350 -annotatedCPC735_058030hypothetical proteinCPC735_058030 covers 100% of it on the same strand
MAT1-2-1core_MAT4378795-4379924 +annotatedCPC735_058040mating type HMG-box protein, putativeCPC735_058040 covers 100% of it on the same strand
APN2flanking_conserved4380656-4382712 -annotatedCPC735_058050DNA lyase Apn2, putativeCPC735_058050 covers 100% of it on the same strand
COX13flanking_conserved4383345-4384013 +annotatedCPC735_058060cytochrome c oxidase polypeptide VIa, mitochondrial precursor, putativeCPC735_058060 covers 100% of it on the same strand