CgattiiNT10 Cryptococcus gattii NT-10

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence medium, KN905664:39402-45817

MATPredictFungiDBSTE3 (core_MAT) KN905664:39402-40720 + identity 90.5STE3MFalpha (core_MAT) KN905664:45701-45817 - identity 94.7MFalphaI311_06451 32049-34413 -: STE/STE20/PAKA protein kinaseI311_06451I311_06452 34873-35170 -: hypothetical proteinI311_06452I311_06453 36811-38240 -: electron transfer flavoprotein alpha subunitI311_06453I311_06454 39402-40720 +: pheromone a factor receptorI311_06454I311_06455 41906-44569 +: IKS protein kinaseI311_06455I311_06456 45701-45817 -: fungal mating-type pheromoneI311_0645636 kb38 kb40 kb42 kb44 kb46 kb48 kb50 kbKN905664
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
STE3core_MAT39402-40720 +annotatedI311_06454pheromone a factor receptorI311_06454 covers 100% of it on the same strand
MFalphacore_MAT45701-45817 -annotatedI311_06456fungal mating-type pheromoneI311_06456 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I311_0645541906-44569 +IKS protein kinase