MATPredict · mating-type report

CdepauperatusCBS7855

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:16 UTC by MATPredict 0.8.1

Result

Mating type

alphamedium confidence

Called loci 1

alpha MAT family · Basidiomycota

medium confidence
Gene order of the alpha locus on AWGL01000003alpha locus: genes from left to right on AWGL01000003, 585,506 to 725,701: STE3 (core MAT gene, plus strand); RPL39 (core MAT gene, plus strand); MFalpha (core MAT gene, minus strand).600 kb650 kb700 kb515.7 kb more to contig end →called locusSTE3: core MAT gene, 585,506–586,660 (+), identity 58.2%, search hit onlySTE3RPL39: core MAT gene, 667,815–668,089 (+), identity 95.92%, the two modelling tools disagreeRPL39MFalpha: core MAT gene, 725,606–725,701 (-), identity 47.368%, search hit onlyMFalpha
Gene order on AWGL01000003. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on AWGL01000003, 578,489 to 732,702L204_01789 578,912-580,336 (+): carbamoyl-phosphate synthase, small subunitL204_01789L204_01790 581,133-582,592 (-): argininosuccinate synthaseL204_01790L204_01791 583,570-584,750 (+): unspecified productL204_01791L204_01792 585,506-586,660 (+): Pheromone A receptor | domain-containing proteinL204_01792L204_01793 587,087-588,215 (+): 20S proteasome subunit alpha 4L204_01793L204_01794 589,372-590,321 (-): unspecified productL204_01794L204_01795 591,232-594,079 (+): 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | Tsr1, G-like domain | AARP2CN (NUC121) domain | domain-containing proteinL204_01795L204_01796 595,775-598,516 (+): unspecified productL204_01796L204_01797 599,098-600,876 (-): histone-lysine N-methyltransferase Su(var)3-9L204_01797L204_01798 602,320-608,059 (+): Chromatin-remodeling ATPase INO80L204_01798L204_01799 609,214-609,717 (+): co-chaperoneL204_01799L204_01800 609,915-612,750 (-): V-type H+-transporting ATPase subunit IL204_01800L204_01801 613,300-615,988 (+): RhoGEF domain | domain-containing proteinL204_01801L204_01802 616,790-619,841 (-): importin subunit beta-1L204_01802L204_01803 620,330-624,106 (-): exosome complex exonuclease DIS3/RRP44L204_01803L204_01804 625,713-626,187 (+): unspecified productL204_01804L204_01805 627,524-629,344 (-): ribosome assembly protein 4L204_01805L204_01806 629,643-630,971 (+): ATP phosphoribosyltransferaseL204_01806L204_01807 631,420-632,361 (-): Nucleoporin protein Ndc1-Nup | domain-containing proteinL204_01807L204_01808 634,248-635,698 (-): DNA-binding protein, 42 kDaL204_01808L204_01809 636,003-638,309 (-): Zinc finger, C3HC4 type (RING finger) | domain-containing proteinL204_01809L204_01810 638,651-638,971 (+): unspecified productL204_01810L204_01811 641,191-642,053 (+): protein mago nashiL204_01811L204_01812 643,154-647,565 (-): dolichyl-phosphate-mannose-protein mannosyltransferaseL204_01812L204_01813 648,483-650,324 (+): VHS domain-containing proteinL204_01813L204_01814 652,147-654,127 (+): dihydrolipoyl dehydrogenaseL204_01814L204_01815 657,172-659,458 (+): STE/STE20/PAKA protein kinaseL204_01815L204_01816 661,402-665,221 (-): WD domain, G-beta repeat | domain-containing proteinL204_01816L204_01817 669,546-673,641 (-): ATP-dependent RNA helicase DHX8/PRP22L204_01817L204_01818 674,420-677,045 (+): eukaryotic translation initiation factor 3 subunit BL204_01818L204_01819 677,453-683,252 (-): IQ calmodulin-binding motif | Myosin head (motor domain) | DIL domain | domain-containing proteinL204_01819L204_01820 684,207-687,844 (+): PHD-finger | PHD-zinc-finger like domain | BAH domain | domain-containing proteinL204_01820L204_01821 688,718-690,516 (+): First Longin domain of FUZ, MON1 and HPS1 | Second Longin domain of FUZ, MON1 and HPS1 | domain-containing proteinL204_01821L204_01822 691,632-693,161 (-): adenylyltransferase and sulfurtransferaseL204_01822L204_01823 694,062-694,911 (+): ubiquinone biosynthesis monooxygenase Coq7L204_01823L204_01824 695,084-696,908 (-): homocitrate synthase, cytosolic isozymeL204_01824L204_01825 697,553-700,253 (-): polynucleotide adenylyltransferaseL204_01825L204_01826 701,739-702,160 (-): H/ACA ribonucleoprotein complex subunit 3L204_01826L204_01827 702,925-707,605 (+): Non-repetitive/WGA-negative nucleoporin C-terminal | Nup133 N terminal like | domain-containing proteinL204_01827L204_01828 710,184-714,483 (+): DNA-directed RNA polymerase, mitochondrialL204_01828L204_01829 715,171-716,664 (+): WD domain, G-beta repeat | domain-containing proteinL204_01829L204_01830 717,533-718,992 (-): NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9L204_01830L204_01831 719,880-721,950 (+): BTB/POZ domain | domain-containing proteinL204_01831L204_01832 723,667-724,726 (-): eukaryotic translation initiation factor 3 subunit KL204_01832L204_01833 726,532-728,293 (-): serine-tRNA ligaseL204_01833L204_01834 728,504-729,711 (+): serine/threonine-protein phosphatase 6 catalytic subunitL204_01834L204_01835 729,805-731,154 (-): ribosomal RNA assembly proteinL204_01835L204_01836 731,398-734,341 (+): transcription factorL204_01836
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • tools disagree
  • alternate model
  • search hit only
Location
AWGL01000003:585,506–725,701 · 140.2 kb
Own genes
AWGL01000003:585,506–725,701 · 140.2 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 3 gene hits
Nearest contig end
522.7 kb
Region (samtools)
AWGL01000003:585506-725701
Idiomorph scores
  • alpha 33.5

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
STE3core MAThit onlyDIAMOND, proteome58.2cov 91.2%5.6e-142398 bits585,506–586,660 +–40410_jec20_MAT_aL204_01792
RPL39core MATmodels differexonerateminiprot: 667,815–668,092, 86.3%95.9cov 98.0%3.1e-1463 bits667,815–668,089 +340410_jec20_MAT_anone
MFalphacore MAThit onlytblastn47.4cov 100.0%5.1e-0434 bits725,606–725,701 -–40410_jec21_MAT_alphanone
FAO1expected, not found–
PAN6expected, not found–
NOG2not searchable: no reference protein in the database–
UAP1not searchable: no reference protein in the database–

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATAWGL01000001:1,840,472–1,842,748aSXI21too few of the family's genes found
MATAWGL01000009:181,163–182,956undeterminedPAN61too few of the family's genes found

Provenance

Genome file
CdepauperatusCBS7855.genome.fasta
Assembly
41 contigs · 15.7 Mb · N50 883.0 kb
Genome SHA-256
d2d0f4d9870ba4731528045570fdffbc4293ce7ae6c73a2c2938432c61890ca3
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'genus', 'routing_taxid': 1884633, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1884633', 'routed_by': 'family taxid 1884633 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:15:41Z
Run time
25 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits