CdepauperatusCBS7855 Cryptococcus depauperatus CBS 7855

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence medium, AWGL01000003:585506-725701

MATPredictFungiDBSTE3 (core_MAT) AWGL01000003:585506-586660 + identity 58.2STE3RPL39 (core_MAT) AWGL01000003:667815-668089 + identity 95.92RPL39MFalpha (core_MAT) AWGL01000003:725606-725701 - identity 47.368MFalphaL204_01790 581133-582592 -: argininosuccinate synthaseL204_01790L204_01791 583570-584750 +: unspecified productL204_01791L204_01792 585506-586660 +: Pheromone A receptor | domain-containing proteinL204_01792L204_01793 587087-588215 +: 20S proteasome subunit alpha 4L204_01793L204_01794 589372-590321 -: unspecified productL204_01794L204_01795 591232-594079 +: 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | Tsr1, G-like domain | AARP2CN (NUC121) domain | domain-containing proteinL204_01795L204_01796 595775-598516 +: unspecified productL204_01796L204_01797 599098-600876 -: histone-lysine N-methyltransferase Su(var)3-9L204_01797L204_01798 602320-608059 +: Chromatin-remodeling ATPase INO80L204_01798L204_01799 609214-609717 +: co-chaperoneL204_01799L204_01800 609915-612750 -: V-type H+-transporting ATPase subunit IL204_01800L204_01801 613300-615988 +: RhoGEF domain | domain-containing proteinL204_01801L204_01802 616790-619841 -: importin subunit beta-1L204_01802L204_01803 620330-624106 -: exosome complex exonuclease DIS3/RRP44L204_01803L204_01804 625713-626187 +: unspecified productL204_01804L204_01805 627524-629344 -: ribosome assembly protein 4L204_01805L204_01806 629643-630971 +: ATP phosphoribosyltransferaseL204_01806L204_01807 631420-632361 -: Nucleoporin protein Ndc1-Nup | domain-containing proteinL204_01807L204_01808 634248-635698 -: DNA-binding protein, 42 kDaL204_01808L204_01809 636003-638309 -: Zinc finger, C3HC4 type (RING finger) | domain-containing proteinL204_01809L204_01810 638651-638971 +: unspecified productL204_01810L204_01811 641191-642053 +: protein mago nashiL204_01811L204_01812 643154-647565 -: dolichyl-phosphate-mannose-protein mannosyltransferaseL204_01812L204_01813 648483-650324 +: VHS domain-containing proteinL204_01813L204_01814 652147-654127 +: dihydrolipoyl dehydrogenaseL204_01814L204_01815 657172-659458 +: STE/STE20/PAKA protein kinaseL204_01815L204_01816 661402-665221 -: WD domain, G-beta repeat | domain-containing proteinL204_01816L204_01817 669546-673641 -: ATP-dependent RNA helicase DHX8/PRP22L204_01817L204_01818 674420-677045 +: eukaryotic translation initiation factor 3 subunit BL204_01818L204_01819 677453-683252 -: IQ calmodulin-binding motif | Myosin head (motor domain) | DIL domain | domain-containing proteinL204_01819L204_01820 684207-687844 +: PHD-finger | PHD-zinc-finger like domain | BAH domain | domain-containing proteinL204_01820L204_01821 688718-690516 +: First Longin domain of FUZ, MON1 and HPS1 | Second Longin domain of FUZ, MON1 and HPS1 | domain-containing proteinL204_01821L204_01822 691632-693161 -: adenylyltransferase and sulfurtransferaseL204_01822L204_01823 694062-694911 +: ubiquinone biosynthesis monooxygenase Coq7L204_01823L204_01824 695084-696908 -: homocitrate synthase, cytosolic isozymeL204_01824L204_01825 697553-700253 -: polynucleotide adenylyltransferaseL204_01825L204_01826 701739-702160 -: H/ACA ribonucleoprotein complex subunit 3L204_01826L204_01827 702925-707605 +: Non-repetitive/WGA-negative nucleoporin C-terminal | Nup133 N terminal like | domain-containing proteinL204_01827L204_01828 710184-714483 +: DNA-directed RNA polymerase, mitochondrialL204_01828L204_01829 715171-716664 +: WD domain, G-beta repeat | domain-containing proteinL204_01829L204_01830 717533-718992 -: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9L204_01830L204_01831 719880-721950 +: BTB/POZ domain | domain-containing proteinL204_01831L204_01832 723667-724726 -: eukaryotic translation initiation factor 3 subunit KL204_01832L204_01833 726532-728293 -: serine-tRNA ligaseL204_01833L204_01834 728504-729711 +: serine/threonine-protein phosphatase 6 catalytic subunitL204_01834L204_01835 729805-731154 -: ribosomal RNA assembly proteinL204_01835600 kb620 kb640 kb660 kb680 kb700 kb720 kbAWGL01000003
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
STE3core_MAT585506-586660 +annotatedL204_01792Pheromone A receptor | domain-containing proteinL204_01792 covers 100% of it on the same strand
RPL39core_MAT667815-668089 +novel—no FungiDB gene overlaps this MATPredict gene
MFalphacore_MAT725606-725701 -novel—no FungiDB gene overlaps this MATPredict gene

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
L204_01793587087-588215 +20S proteasome subunit alpha 4
L204_01794589372-590321 -unspecified product
L204_01795591232-594079 +40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | Tsr1, G-like domain | AARP2CN (NUC121) domain | domain-containing protein
L204_01796595775-598516 +unspecified product
L204_01797599098-600876 -histone-lysine N-methyltransferase Su(var)3-9
L204_01798602320-608059 +Chromatin-remodeling ATPase INO80
L204_01799609214-609717 +co-chaperone
L204_01800609915-612750 -V-type H+-transporting ATPase subunit I
L204_01801613300-615988 +RhoGEF domain | domain-containing protein
L204_01802616790-619841 -importin subunit beta-1
L204_01803620330-624106 -exosome complex exonuclease DIS3/RRP44
L204_01804625713-626187 +unspecified product
L204_01805627524-629344 -ribosome assembly protein 4
L204_01806629643-630971 +ATP phosphoribosyltransferase
L204_01807631420-632361 -Nucleoporin protein Ndc1-Nup | domain-containing protein
L204_01808634248-635698 -DNA-binding protein, 42 kDa
L204_01809636003-638309 -Zinc finger, C3HC4 type (RING finger) | domain-containing protein
L204_01810638651-638971 +unspecified product
L204_01811641191-642053 +protein mago nashi
L204_01812643154-647565 -dolichyl-phosphate-mannose-protein mannosyltransferase
L204_01813648483-650324 +VHS domain-containing protein
L204_01814652147-654127 +dihydrolipoyl dehydrogenase
L204_01815657172-659458 +STE/STE20/PAKA protein kinase
L204_01816661402-665221 -WD domain, G-beta repeat | domain-containing protein
L204_01817669546-673641 -ATP-dependent RNA helicase DHX8/PRP22
L204_01818674420-677045 +eukaryotic translation initiation factor 3 subunit B
L204_01819677453-683252 -IQ calmodulin-binding motif | Myosin head (motor domain) | DIL domain | domain-containing protein
L204_01820684207-687844 +PHD-finger | PHD-zinc-finger like domain | BAH domain | domain-containing protein
L204_01821688718-690516 +First Longin domain of FUZ, MON1 and HPS1 | Second Longin domain of FUZ, MON1 and HPS1 | domain-containing protein
L204_01822691632-693161 -adenylyltransferase and sulfurtransferase
L204_01823694062-694911 +ubiquinone biosynthesis monooxygenase Coq7
L204_01824695084-696908 -homocitrate synthase, cytosolic isozyme
L204_01825697553-700253 -polynucleotide adenylyltransferase
L204_01826701739-702160 -H/ACA ribonucleoprotein complex subunit 3
L204_01827702925-707605 +Non-repetitive/WGA-negative nucleoporin C-terminal | Nup133 N terminal like | domain-containing protein
L204_01828710184-714483 +DNA-directed RNA polymerase, mitochondrial
L204_01829715171-716664 +WD domain, G-beta repeat | domain-containing protein
L204_01830717533-718992 -NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9
L204_01831719880-721950 +BTB/POZ domain | domain-containing protein
L204_01832723667-724726 -eukaryotic translation initiation factor 3 subunit K