CbacillisporusCA1873 Cryptococcus bacillisporus CA1873

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: a Basidiomycota:MAT, confidence high, KN848897:134584-253284

MATPredictFungiDBSXI2 (core_MAT) KN848897:134584-137112 - identity 68.7SXI2RPL39 (core_MAT) KN848897:155342-155597 + identity 100.0RPL39STE3 (core_MAT) KN848897:215238-216570 - identity 64.6STE3MFa (core_MAT) KN848897:241431-241553 + identity 95.12MFaPAN6 (flanking_conserved) KN848897:251592-253284 + identity 90.5PAN6I314_03610 132073-133933 -: NCS2 family nucleobase:cation symporter-2I314_03610I314_03611 134584-137112 -: Homeodomain | domain-containing proteinI314_03611I314_03612 138253-138591 -: hypothetical proteinI314_03612I314_03613 140121-144538 -: phospholipase DI314_03613I314_03614 146006-148244 +: Glycosyl transferase family 90 | domain-containing proteinI314_03614I314_03615 151954-152603 +: hypothetical proteinI314_03615I314_03616 157573-159344 -: BTB/POZ domain | domain-containing proteinI314_03616I314_03617 162977-166984 -: DNA-directed RNA polymerase, mitochondrialI314_03617I314_03618 167602-170318 +: hypothetical proteinI314_03618I314_03619 170739-171446 -: hypothetical proteinI314_03619I314_03620 173023-175973 -: polynucleotide adenylyltransferaseI314_03620I314_03621 176838-180007 -: RhoGEF domain | domain-containing proteinI314_03621I314_03622 181144-181767 +: hypothetical proteinI314_03622I314_03623 183035-185786 -: Structure-specific endonuclease subunit SLX4I314_03623I314_03624 192052-192456 -: hypothetical proteinI314_03624I314_03625 194580-195178 +: 50S small subunit ribosomal protein L22eI314_03625I314_03626 196021-197431 +: electron transfer flavoprotein alpha subunitI314_03626I314_03627 199165-199539 +: hypothetical proteinI314_03627I314_03628 199752-204635 -: STE/STE11 protein kinaseI314_03628I314_03629 207080-209849 +: eukaryotic translation initiation factor 3 subunit BI314_03629I314_03630 209971-213602 -: BAH domain | PHD-finger | PHD-finger | domain-containing proteinI314_03630I314_03631 215238-216570 -: Pheromone A receptor | domain-containing proteinI314_03631I314_03632 219738-220293 -: hypothetical proteinI314_03632I314_03633 224024-224371 +: hypothetical proteinI314_03633I314_03634 225339-227783 +: STE/STE20/PAKA protein kinaseI314_03634I314_03635 230854-232502 -: IKS protein kinaseI314_03635I314_03636 234632-240416 +: IQ calmodulin-binding motif | Myosin head (motor domain) | DIL domain | domain-containing proteinI314_03636I314_03637 247159-247690 +: hypothetical proteinI314_03637I314_03638 248395-251251 +: nucleolar GTP-binding protein 2I314_03638I314_03639 251592-253284 +: pantoate-beta-alanine ligaseI314_03639I314_03640 253487-256112 -: hypothetical proteinI314_03640I314_03641 257039-257458 -: Heat shock protein 9/12 | domain-containing proteinI314_03641I314_03642 257543-257683 +: hypothetical proteinI314_03642140 kb160 kb180 kb200 kb220 kb240 kbKN848897
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SXI2core_MAT134584-137112 -annotatedI314_03611Homeodomain | domain-containing proteinI314_03611 covers 100% of it on the same strand
RPL39core_MAT155342-155597 +novel—no FungiDB gene overlaps this MATPredict gene
STE3core_MAT215238-216570 -annotatedI314_03631Pheromone A receptor | domain-containing proteinI314_03631 covers 100% of it on the same strand
MFacore_MAT241431-241553 +novel—no FungiDB gene overlaps this MATPredict gene
PAN6flanking_conserved251592-253284 +annotatedI314_03639pantoate-beta-alanine ligaseI314_03639 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I314_03612138253-138591 -hypothetical protein
I314_03613140121-144538 -phospholipase D
I314_03614146006-148244 +Glycosyl transferase family 90 | domain-containing protein
I314_03615151954-152603 +hypothetical protein
I314_03616157573-159344 -BTB/POZ domain | domain-containing protein
I314_03617162977-166984 -DNA-directed RNA polymerase, mitochondrial
I314_03618167602-170318 +hypothetical protein
I314_03619170739-171446 -hypothetical protein
I314_03620173023-175973 -polynucleotide adenylyltransferase
I314_03621176838-180007 -RhoGEF domain | domain-containing protein
I314_03622181144-181767 +hypothetical protein
I314_03623183035-185786 -Structure-specific endonuclease subunit SLX4
I314_03624192052-192456 -hypothetical protein
I314_03625194580-195178 +50S small subunit ribosomal protein L22e
I314_03626196021-197431 +electron transfer flavoprotein alpha subunit
I314_03627199165-199539 +hypothetical protein
I314_03628199752-204635 -STE/STE11 protein kinase
I314_03629207080-209849 +eukaryotic translation initiation factor 3 subunit B
I314_03630209971-213602 -BAH domain | PHD-finger | PHD-finger | domain-containing protein
I314_03632219738-220293 -hypothetical protein
I314_03633224024-224371 +hypothetical protein
I314_03634225339-227783 +STE/STE20/PAKA protein kinase
I314_03635230854-232502 -IKS protein kinase
I314_03636234632-240416 +IQ calmodulin-binding motif | Myosin head (motor domain) | DIL domain | domain-containing protein
I314_03637247159-247690 +hypothetical protein
I314_03638248395-251251 +nucleolar GTP-binding protein 2