MrestrictaKCTC27527 Malassezia restricta KCTC 27527

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_bLocus_0: undetermined Basidiomycota:bLocus, confidence high, CP030254:430565-434186

MATPredictFungiDBbE (core_MAT) CP030254:431215-432129 - identity 45.4bEbW (core_MAT) CP030254:432606-434186 + identity 77.1bWMRET_2622 425259-426894 +: acyl-CoA dehydrogenaseMRET_2622MRET_2623 428823-430490 -: uncharacterized proteinMRET_2623MRET_2624 430565-431119 -: exosome complex protein LRP1MRET_2624MRET_2625 431215-432129 -: homeobox domain proteinMRET_2625MRET_2626 432606-434186 +: homeobox domain proteinMRET_2626MRET_2627 434387-436102 +: methionine permeaseMRET_2627MRET_2628 436141-440496 -: ATP-dependent RNA helicase DHX29MRET_2628426 kb428 kb430 kb432 kb434 kb436 kb438 kbCP030254
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bEcore_MAT431215-432129 -annotatedMRET_2625homeobox domain proteinMRET_2625 covers 100% of it on the same strand
bWcore_MAT432606-434186 +annotatedMRET_2626homeobox domain proteinMRET_2626 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
MRET_2624430565-431119 -exosome complex protein LRP1

Basidiomycota_aLocus_1: undetermined Basidiomycota:aLocus, confidence high, CP030255:606874-608743

MATPredictFungiDBpra1 (core_MAT) CP030255:606874-608069 - identity 31.8pra1mfa1 (core_MAT) CP030255:608594-608743 + identity 46.0mfa1MRET_3183 601827-604019 +: translation initiation factor IF-2MRET_3183MRET_3184 604081-604596 +: ubiquitin-conjugating enzyme E2 G1MRET_3184MRET_3185 604599-605543 -: CCR4-NOT transcription complex subunit 7/8MRET_3185MRET_3186 605660-606745 +: 26S proteasome regulatory subunit N10MRET_3186MRET_3187 606874-608069 -: pheromone a factor receptorMRET_3187MRET_3188 609371-610141 +: exosome complex component RRP41MRET_3188MRET_3189 610346-611356 +: glyceraldehyde 3-phosphate dehydrogenaseMRET_3189MRET_3190 611368-613959 -: cell division control protein 24MRET_3190602 kb603 kb604 kb605 kb606 kb607 kb608 kb609 kb610 kb611 kb612 kb613 kbCP030255
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
pra1core_MAT606874-608069 -annotatedMRET_3187pheromone a factor receptorMRET_3187 covers 100% of it on the same strand
mfa1core_MAT608594-608743 +novel—no FungiDB gene overlaps this MATPredict gene