MATPredict · mating-type report

MphaseolinaMS6

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:56 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on AHHD01000467MAT1-1 locus: genes from left to right on AHHD01000467, 123,189 to 132,683: MAT1-1-1 (core MAT gene, minus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand).124 kb126 kb128 kb130 kb132 kb← 122.7 kb more to contig endcalled locusMAT1-1-1: core MAT gene, 123,189–124,579 (-), identity 41.0%, search hit onlyMAT1-1-1APN2: conserved flank, 127,078–130,846 (-), identity 84.1%, search hit onlyAPN2COX13: conserved flank, 131,417–132,683 (+), identity 72.3%, search hit onlyCOX13
Gene order on AHHD01000467. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on AHHD01000467, 122,716 to 133,157MPH_11058 123,189-124,579 (-): Mating-type protein MAT alpha 1MPH_11058MPH_11059 124,991-126,278 (+): unspecified productMPH_11059MPH_11060 127,078-130,846 (-): Exodeoxyribonuclease III xthMPH_11060MPH_11061 131,417-132,683 (+): Cytochrome c oxidase subunit VIaMPH_11061MPH_11062 133,106-136,018 (-): Anaphase-promoting complex subunit 5 [Source:UniProtKB/TrEMBL;Acc:K2RN16]MPH_11062
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
AHHD01000467:123,189–132,683 · 9.5 kb
Own genes
AHHD01000467:123,189–132,683 · 9.5 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
3 of 3 gene hits
Nearest contig end
123.2 kb
Region (samtools)
AHHD01000467:123189-132683
Idiomorph scores
  • MAT1-1 121.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-1-1core MAThit onlyDIAMOND, proteome41.0cov 43.5%1.6e-33121 bits123,189–124,579 -–2903220_liq80xsp_MAT_combinedMPH_11058
APN2conserved flankhit onlyDIAMOND, proteome84.1cov 36.7%5.5e-205597 bits127,078–130,846 -–2903220_liq80xsp_MAT_combinedMPH_11060
COX13conserved flankhit onlyDIAMOND, proteome72.3cov 61.9%2.5e-58170 bits131,417–132,683 +–162425_fgsc-a4_MAT_combinedMPH_11061
SLA2expected, not found–

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATAHHD01000467:470,233–473,762undeterminedSLA21too few of the family's genes found

Provenance

Genome file
MphaseolinaMS6.genome.fasta
Assembly
1,506 contigs · 48.9 Mb · N50 150.2 kb
Genome SHA-256
8b955aac7a1799f3d30debfe270db78aaa4937fe5be9131eeccd33ec07f74eec
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 45131, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 45131', 'routed_by': 'family taxid 45131 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:54:20Z
Run time
118 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits