MATPredict · mating-type report

HcapsulatumG217B

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:51 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on JAEVHH010000004MAT1-1 locus: genes from left to right on JAEVHH010000004, 3,551,809 to 3,569,073: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, minus strand); MAT1-1-4 (core MAT gene, minus strand); COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand).3,555 kb3,560 kb3,565 kb2,925.3 kb more to contig end →called locusSLA2: conserved flank, 3,551,809–3,556,113 (+), identity 90.7%, search hit onlySLA2MAT1-1-1: core MAT gene, 3,559,479–3,560,735 (-), identity 49.0%, search hit onlyMAT1-1-1MAT1-1-4: core MAT gene, 3,561,385–3,562,893 (-), identity 43.7%, search hit onlyMAT1-1-4COX13: conserved flank, 3,565,531–3,566,447 (-), identity 78.9%, search hit onlyCOX13APN2: conserved flank, 3,566,837–3,569,073 (+), identity 84.1%, search hit onlyAPN2
Gene order on JAEVHH010000004. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on JAEVHH010000004, 3,550,945 to 3,569,937I7I48_04478 3,547,676-3,551,093 (+): putative PH domain-containing proteinI7I48_04478I7I48_04479 3,549,327-3,551,458 (-): hypothetical RNAI7I48_04479I7I48_04480 3,551,588-3,557,342 (+): cytoskeleton assembly control proteinI7I48_04480 SLA2I7I48_04481 3,559,228-3,559,920 (+): hypothetical RNAI7I48_04481I7I48_04482 3,559,235-3,561,061 (-): alpha-box mating type protein of the mating-type locus, mycelia-enriched transcriptI7I48_04482 MAT1-1I7I48_04483 3,561,062-3,565,093 (-): unspecified productI7I48_04483I7I48_04484 3,565,192-3,566,549 (-): cytochrome c oxidase subunit VIaI7I48_04484I7I48_04485 3,566,668-3,570,278 (+): DNA lyase Apn2I7I48_04485 APN2
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
JAEVHH010000004:3,551,809–3,569,073 · 17.3 kb
Own genes
JAEVHH010000004:3,551,809–3,569,073 · 17.3 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
2.9 Mb
Region (samtools)
JAEVHH010000004:3551809-3569073
Idiomorph scores
  • MAT1-1 332.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome90.7cov 99.3%< 1e-1801,572 bits3,551,809–3,556,113 +–107463_unknown-1_MAT_MAT1-2I7I48_04480 SLA2
MAT1-1-1core MAThit onlyDIAMOND, proteome49.0cov 99.2%5.2e-114332 bits3,559,479–3,560,735 -–199306_rmscc1040_MAT_MAT1-1I7I48_04481 (opposite strand)
I7I48_04482 MAT1-1
MAT1-1-4core MAThit onlyDIAMOND, proteome43.7cov 67.9%1.1e-39132 bits3,561,385–3,562,893 -–199306_rmscc1040_MAT_MAT1-1I7I48_04483
COX13conserved flankhit onlyDIAMOND, proteome78.9cov 84.4%1.1e-59174 bits3,565,531–3,566,447 -–5501_rs_MAT_MAT1-2I7I48_04484
APN2conserved flankhit onlyDIAMOND, proteome84.1cov 36.7%3.9e-241675 bits3,566,837–3,569,073 +–2903220_liq80xsp_MAT_combinedI7I48_04485 APN2

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATJAEVHH010000003:4,667,426–4,669,767MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
HcapsulatumG217B.genome.fasta
Assembly
12 contigs · 39.4 Mb · N50 6.7 Mb
Genome SHA-256
66ae08c78f019fd8abeaa21e95e1387388d269979bd9d76490194232c31822b9
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 299071, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 299071', 'routed_by': 'family taxid 299071 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:49:45Z
Run time
79 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits