HcapsulatumG217B Histoplasma capsulatum G217B

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, JAEVHH010000004:3551809-3569073

MATPredictFungiDBSLA2 (flanking_conserved) JAEVHH010000004:3551809-3556113 + identity 90.7SLA2MAT1-1-1 (core_MAT) JAEVHH010000004:3559479-3560735 - identity 49.0MAT1-1-1MAT1-1-4 (core_MAT) JAEVHH010000004:3561385-3562893 - identity 43.7MAT1-1-4COX13 (flanking_conserved) JAEVHH010000004:3565531-3566447 - identity 78.9COX13APN2 (flanking_conserved) JAEVHH010000004:3566837-3569073 + identity 84.1APN2I7I48_04477 3546949-3547338 -: hypothetical RNAI7I48_04477I7I48_04478 3547676-3551093 +: putative PH domain-containing proteinI7I48_04478I7I48_04479 3549327-3551458 -: hypothetical RNAI7I48_04479I7I48_04480 SLA2 3551588-3557342 +: cytoskeleton assembly control proteinI7I48_04480 SLA2I7I48_04481 3559228-3559920 +: hypothetical RNAI7I48_04481I7I48_04482 MAT1-1 3559235-3561061 -: alpha-box mating type protein of the mating-type locus, mycelia-enriched transcriptI7I48_04482 MAT1-1I7I48_04483 3561062-3565093 -: unspecified productI7I48_04483I7I48_04484 3565192-3566549 -: cytochrome c oxidase subunit VIaI7I48_04484I7I48_04485 APN2 3566668-3570278 +: DNA lyase Apn2I7I48_04485 APN2I7I48_04486 SRB8 3571082-3577402 +: RNA polymerase II mediator complex component Srb8I7I48_04486 SRB83548 kb3552 kb3556 kb3560 kb3564 kb3568 kb3572 kbJAEVHH010000004
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved3551809-3556113 +annotatedI7I48_04480 SLA2cytoskeleton assembly control proteinI7I48_04480 covers 100% of it on the same strand
MAT1-1-1core_MAT3559479-3560735 -annotatedI7I48_04482 MAT1-1alpha-box mating type protein of the mating-type locus, mycelia-enriched transcriptI7I48_04482 covers 100% of it on the same strand
MAT1-1-4core_MAT3561385-3562893 -annotatedI7I48_04483unspecified productI7I48_04483 covers 100% of it on the same strand
COX13flanking_conserved3565531-3566447 -annotatedI7I48_04484cytochrome c oxidase subunit VIaI7I48_04484 covers 100% of it on the same strand
APN2flanking_conserved3566837-3569073 +annotatedI7I48_04485 APN2DNA lyase Apn2I7I48_04485 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I7I48_044813559228-3559920 +hypothetical RNA