MATPredict · mating-type report

CaurisB11221

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:20 UTC by MATPredict 0.8.1

Result

Mating type

alphahigh confidence

Called loci 1

alpha MTL family · Ascomycota

high confidence
Gene order of the alpha locus on PGLS01000002alpha locus: genes from left to right on PGLS01000002, 189,357 to 195,813: PAP1 (variable flank, plus strand); MTLalpha1 (core MAT gene, minus strand); PIK1 (variable flank, minus strand); OBP1 (variable flank, minus strand).190 kb192 kb194 kb196 kb← 189.0 kb more to contig endcalled locusPAP1: variable flank, 189,357–191,045 (+), identity 100.0%, search hit onlyPAP1MTLalpha1: core MAT gene, 191,042–191,560 (-), identity 100.0%, search hit onlyMTLalpha1PIK1: variable flank, 191,653–194,448 (-), identity 100.0%, search hit onlyPIK1OBP1: variable flank, 194,620–195,813 (-), identity 100.0%, search hit onlyOBP1
Gene order on PGLS01000002. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on PGLS01000002, 189,035 to 196,135CJI97_001148 186,929-189,259 (+): unspecified productCJI97_001148CJI97_001149 189,357-191,045 (+): Poly(A) polymerase PAPalphaCJI97_001149CJI97_005719 191,042-191,560 (-): mating type MTLalpha1CJI97_005719CJI97_001150 191,653-194,448 (-): unspecified productCJI97_001150CJI97_001151 194,620-195,813 (-): unspecified productCJI97_001151
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • variable flank
  • search hit only
Location
PGLS01000002:189,357–195,813 · 6.5 kb
Cross-lineage class
MAT1-1
Own genes
PGLS01000002:189,357–195,813 · 6.5 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 4 gene hits
Nearest contig end
189.4 kb
Region (samtools)
PGLS01000002:189357-195813
Idiomorph scores
  • alpha 333.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
PAP1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,118 bits189,357–191,045 +–498019_b11221_MTL_alphaCJI97_001149
CJI97_005719 (opposite strand)
MTLalpha1core MAThit onlyDIAMOND, proteome100.0cov 100.0%4.8e-122333 bits191,042–191,560 -–498019_b11221_MTL_alphaCJI97_001149 (opposite strand)
CJI97_005719
PIK1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,776 bits191,653–194,448 -–498019_b11221_MTL_alphaCJI97_001150
OBP1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%8.0e-297794 bits194,620–195,813 -–498019_b11221_MTL_alphaCJI97_001151

Withheld candidate loci 48

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (47); too few of the family's genes found (1).

Show the 48 withheld loci

Withheld loci (48)

familylocationidiomorph genesmodelledreason
MTLPGLS01000001:79,727–79,876alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000001:192,853–192,969alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000001:245,909–246,040alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000001:751,917–776,766alphaMTLA1, MTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000001:1,015,764–1,041,575AMTLA1, PIK11fewer than 2 genes could be modelled
MTLPGLS01000001:1,319,352–1,319,591AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000001:1,439,753–1,439,884AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000001:1,720,076–1,720,288alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000001:2,176,540–2,176,689AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000001:2,321,461–2,321,640AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000002:634,278–634,394alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000002:712,514–712,627AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000002:1,046,062–1,046,223AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000002:1,253,882–1,254,121alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000004:321,887–324,853AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPGLS01000004:813,458–813,574AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000004:871,490–871,660AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000004:1,387,214–1,407,551AMTLA1, MTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000004:1,730,459–1,730,581AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000004:1,985,706–1,985,816AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000004:2,092,295–2,092,387AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000004:3,394,786–3,394,911AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000004:3,527,764–3,546,477AMTLA1, PIK11fewer than 2 genes could be modelled
MTLPGLS01000004:3,728,785–3,728,985alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000004:3,880,351–3,880,533AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000004:3,983,965–3,984,201AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000005:175,214–175,312alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000005:216,184–216,282alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000005:292,339–292,482AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000005:320,023–320,187alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000005:476,864–476,998alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000005:577,503–577,835AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000005:732,691–732,816AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000005:810,289–810,408AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000007:331,422–333,837AMTLA2, MTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000007:480,183–480,287alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000007:512,897–513,100AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000007:632,687–632,794AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000007:981,446–981,577AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000007:1,320,741–1,320,926AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000007:1,401,195–1,401,311AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000006:18,869–19,009AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000006:121,916–122,188AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000006:583,238–583,477AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000003:107,902–108,072alphaMTLalpha10fewer than 2 genes could be modelled
MTLPGLS01000003:219,468–219,659AMTLA10fewer than 2 genes could be modelled
MTLPGLS01000003:735,094–735,213AMTLA20fewer than 2 genes could be modelled
MTLPGLS01000001:1,937,049–1,938,308undeterminedOBP11too few of the family's genes found

Provenance

Genome file
CaurisB11221.genome.fasta
Assembly
20 contigs · 12.7 Mb · N50 2.4 Mb
Genome SHA-256
9fe865828269557a00f34af6f1a6ad060ceb469a951fdebb358029abf1191006
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 27319, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 12, 'genetic_code_from': 'family taxid 27319', 'routed_by': 'family taxid 27319 (lineage)'}, genetic_code=12, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:20:23Z
Run time
35 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits