MATPredict · mating-type report

AnigerATCC13496

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:00 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KZ851904MAT1-1 locus: genes from left to right on KZ851904, 1,021,188 to 1,052,765: SLA2 (conserved flank, plus strand); MAT1-1-3 (core MAT gene, plus strand); COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand).1,020 kb1,025 kb1,030 kb1,035 kb1,040 kb1,045 kb1,050 kb34.2 kb more to contig end →called locusSLA2: conserved flank, 1,021,188–1,025,012 (+), identity 90.1%, search hit onlySLA2MAT1-1-3: core MAT gene, 1,038,080–1,038,172 (+), identity 41.935%, search hit onlyMAT1-1-3COX13: conserved flank, 1,045,945–1,046,660 (-), identity 77.3%, search hit onlyCOX13APN2: conserved flank, 1,047,196–1,049,331 (+), identity 90.9%, search hit onlyAPN2MAT1-1-1: core MAT gene, 1,051,608–1,052,765 (+), identity 50.4%, search hit onlyMAT1-1-1
Gene order on KZ851904. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on KZ851904, 1,019,608 to 1,054,342M747DRAFT_293483 1,016,972-1,020,540 (+): hypothetical proteinM747DRAFT_293483M747DRAFT_321498 1,020,889-1,025,286 (+): cytoskeleton assembly control protein Sla2M747DRAFT_321498M747DRAFT_302822 1,025,285-1,027,028 (-): salicylate hydroxylaseM747DRAFT_302822M747DRAFT_155710 1,027,255-1,029,050 (-): CoA-transferase family IIIM747DRAFT_155710M747DRAFT_293486 1,029,454-1,031,150 (+): aldehyde dehydrogenase family proteinM747DRAFT_293486M747DRAFT_231416 1,031,305-1,032,696 (-): WD40 repeat-like proteinM747DRAFT_231416M747DRAFT_293487 1,033,708-1,035,560 (-): aspartic proteaseM747DRAFT_293487M747DRAFT_321502 1,036,592-1,038,022 (+): nucleotide-diphospho-sugar transferaseM747DRAFT_321502M747DRAFT_231184 1,038,617-1,039,616 (-): HAD-like proteinM747DRAFT_231184M747DRAFT_321504 1,039,821-1,041,744 (-): hypothetical proteinM747DRAFT_321504M747DRAFT_293489 1,042,626-1,045,715 (+): anaphase-promoting complex subunit Apc5M747DRAFT_293489M747DRAFT_155756 1,045,758-1,046,736 (-): mitochondrial cytochrome c oxidase subunit VIaM747DRAFT_155756M747DRAFT_254885 1,046,996-1,049,411 (+): DNA lyase Apn2M747DRAFT_254885M747DRAFT_362062 1,051,608-1,053,141 (+): mating-type protein MAT alpha 1M747DRAFT_362062M747DRAFT_155824 1,053,142-1,053,879 (-): hypothetical proteinM747DRAFT_155824M747DRAFT_293491 1,053,563-1,054,382 (-): hypothetical proteinM747DRAFT_293491
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KZ851904:1,021,188–1,052,765 · 31.6 kb
Own genes
KZ851904:1,021,188–1,052,765 · 31.6 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 5 gene hits
Nearest contig end
35.8 kb
Region (samtools)
KZ851904:1021188-1052765
Idiomorph scores
  • MAT1-1 332.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome90.1cov 100.0%< 1e-1801,591 bits1,021,188–1,025,012 +–746128_af293_MAT_MAT1-2M747DRAFT_321498
MAT1-1-3core MAThit onlytblastn41.9cov 17.0%7.8e+0027 bits1,038,080–1,038,172 +–5518_3639_MAT_combinednone
COX13conserved flankhit onlyDIAMOND, proteome77.3cov 100.0%1.8e-74211 bits1,045,945–1,046,660 -–746128_af293_MAT_MAT1-2M747DRAFT_155756
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%< 1e-180912 bits1,047,196–1,049,331 +–2903220_liq80xsp_MAT_combinedM747DRAFT_254885
MAT1-1-1core MAThit onlyDIAMOND, proteome50.4cov 93.9%5.9e-115332 bits1,051,608–1,052,765 +–162425_fgsc-a4_MAT_combinedM747DRAFT_362062

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATKZ851915:30,222–32,417MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
AnigerATCC13496.genome.fasta
Assembly
133 contigs · 35.7 Mb · N50 705.4 kb
Genome SHA-256
87b350fa1484e7b296832c058f93ee7315fe6056670e226f9e54ce6f616e30bb
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:59:39Z
Run time
75 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits