MATPredict · mating-type report

AnigerATCC1015

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 01:59 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on ACJE01000019.1MAT1-1 locus: genes from left to right on ACJE01000019.1, 2,513,635 to 2,545,220: MAT1-1-1 (core MAT gene, minus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand); MAT1-1-3 (core MAT gene, minus strand); SLA2 (conserved flank, minus strand).2,515 kb2,520 kb2,525 kb2,530 kb2,535 kb2,540 kb2,545 kb258.9 kb more to contig end →called locusMAT1-1-1: core MAT gene, 2,513,635–2,514,792 (-), identity 50.4%, search hit onlyMAT1-1-1APN2: conserved flank, 2,517,073–2,519,208 (-), identity 90.9%, search hit onlyAPN2COX13: conserved flank, 2,519,744–2,520,459 (+), identity 77.3%, search hit onlyCOX13MAT1-1-3: core MAT gene, 2,528,233–2,528,325 (-), identity 41.935%, search hit onlyMAT1-1-3SLA2: conserved flank, 2,541,396–2,545,220 (-), identity 90.1%, search hit onlySLA2
Gene order on ACJE01000019.1. Scroll sideways to see the whole figure.
FungiDB release 68 gene models on ACJE01000019.1, 2,512,056 to 2,546,799ASPNIDRAFT2_39471 2,512,137-2,512,881 (+): hypothetical proteinASPNIDRAFT2_39471ASPNIDRAFT2_1178859 2,513,635-2,514,792 (-): mating-type protein MAT alpha 1ASPNIDRAFT2_1178859ASPNIDRAFT2_1187921 2,516,869-2,519,385 (-): DNA lyase Apn2|Hypothetical proteinASPNIDRAFT2_1187921ASPNIDRAFT2_1147272 2,519,739-2,520,656 (+): hypothetical cytochrome C oxidase|Mitochondrial cytochrome c oxidase subunit VIaASPNIDRAFT2_1147272ASPNIDRAFT2_1187923 2,520,689-2,523,464 (-): hypothetical proteinASPNIDRAFT2_1187923ASPNIDRAFT2_1128137 2,524,744-2,526,583 (+): hypothetical proteinASPNIDRAFT2_1128137ASPNIDRAFT2_1095364 2,526,788-2,527,207 (+): hypothetical proteinASPNIDRAFT2_1095364ASPNIDRAFT2_1128138 2,527,162-2,527,897 (+): HAD-like proteinASPNIDRAFT2_1128138ASPNIDRAFT2_1187925 2,528,344-2,529,801 (-): Glycosyltransferase Family 8 proteinASPNIDRAFT2_1187925ASPNIDRAFT2_1160288 2,530,803-2,532,792 (+): aspartic protease|hypothetical aspartic proteaseASPNIDRAFT2_1160288ASPNIDRAFT2_39480 2,533,710-2,535,100 (+): WD40 repeat-like proteinASPNIDRAFT2_39480ASPNIDRAFT2_1187926 2,535,397-2,536,945 (-): Aldehyde dehydrogenaseASPNIDRAFT2_1187926ASPNIDRAFT2_53077 2,537,125-2,538,926 (+): CoA-transferase family IIIASPNIDRAFT2_53077ASPNIDRAFT2_1187928 2,539,214-2,541,154 (+): salicylate hydroxylaseASPNIDRAFT2_1187928ASPNIDRAFT2_1128148 2,541,123-2,545,385 (-): cytoskeleton assembly control protein Sla2ASPNIDRAFT2_1128148ASPNIDRAFT2_1167986 2,545,710-2,549,556 (-): hypothetical proteinASPNIDRAFT2_1167986
FungiDB release 68 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
ACJE01000019.1:2,513,635–2,545,220 · 31.6 kb
Own genes
ACJE01000019.1:2,513,635–2,545,220 · 31.6 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 5 gene hits
Nearest contig end
260.5 kb
Region (samtools)
ACJE01000019.1:2513635-2545220
Idiomorph scores
  • MAT1-1 330.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-1-1core MAThit onlyDIAMOND, proteome50.4cov 93.9%3.4e-114330 bits2,513,635–2,514,792 -–162425_fgsc-a4_MAT_combinedASPNIDRAFT2_1178859
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%< 1e-180911 bits2,517,073–2,519,208 -–2903220_liq80xsp_MAT_combinedASPNIDRAFT2_1187921
COX13conserved flankhit onlyDIAMOND, proteome77.3cov 100.0%1.8e-74211 bits2,519,744–2,520,459 +–746128_af293_MAT_MAT1-2ASPNIDRAFT2_1147272
MAT1-1-3core MAThit onlytblastn41.9cov 17.0%7.6e+0027 bits2,528,233–2,528,325 -–5518_3639_MAT_combinednone
SLA2conserved flankhit onlyDIAMOND, proteome90.1cov 100.0%< 1e-1801,591 bits2,541,396–2,545,220 -–746128_af293_MAT_MAT1-2ASPNIDRAFT2_1128148

Withheld candidate loci 3

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (3).

Show the 3 withheld loci

Withheld loci (3)

familylocationidiomorph genesmodelledreason
MATACJE01000013.1:539,829–542,019MAT1-2MAT1-2-11too few of the family's genes found
MATACJE01000016.1:1,470,955–1,477,328MAT1-2MAT1-2-11too few of the family's genes found
MATACJE01000022.1:28,319–37,798MAT1-2MAT1-1-1, MAT1-2-11too few of the family's genes found

Provenance

Genome file
AnigerATCC1015.genome.fasta
Assembly
24 contigs · 34.9 Mb · N50 1.9 Mb
Genome SHA-256
d04240a9e454e2bf50df3320c5b34fb19c7eb0ad2c3ee2012c0c721f6244cddb
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T01:58:17Z
Run time
74 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits