AnigerATCC1015 Aspergillus niger ATCC 1015

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, ACJE01000019.1:2513635-2545220

MATPredictFungiDBMAT1-1-1 (core_MAT) ACJE01000019.1:2513635-2514792 - identity 50.4MAT1-1-1APN2 (flanking_conserved) ACJE01000019.1:2517073-2519208 - identity 90.9APN2COX13 (flanking_conserved) ACJE01000019.1:2519744-2520459 + identity 77.3COX13MAT1-1-3 (core_MAT) ACJE01000019.1:2528233-2528325 - identity 41.935MAT1-1-3SLA2 (flanking_conserved) ACJE01000019.1:2541396-2545220 - identity 90.1SLA2ASPNIDRAFT2_1225150 2508326-2509473 -: SAICAR synthetaseASPNIDRAFT2_1225150ASPNIDRAFT2_1187920 2509694-2510816 -: hypothetical proteinASPNIDRAFT2_1187920ASPNIDRAFT2_39471 2512137-2512881 +: hypothetical proteinASPNIDRAFT2_39471ASPNIDRAFT2_1178859 2513635-2514792 -: mating-type protein MAT alpha 1ASPNIDRAFT2_1178859ASPNIDRAFT2_1187921 2516869-2519385 -: DNA lyase Apn2|Hypothetical proteinASPNIDRAFT2_1187921ASPNIDRAFT2_1147272 2519739-2520656 +: hypothetical cytochrome C oxidase|Mitochondrial cytochrome c oxidase subunit VIaASPNIDRAFT2_1147272ASPNIDRAFT2_1187923 2520689-2523464 -: hypothetical proteinASPNIDRAFT2_1187923ASPNIDRAFT2_1128137 2524744-2526583 +: hypothetical proteinASPNIDRAFT2_1128137ASPNIDRAFT2_1095364 2526788-2527207 +: hypothetical proteinASPNIDRAFT2_1095364ASPNIDRAFT2_1128138 2527162-2527897 +: HAD-like proteinASPNIDRAFT2_1128138ASPNIDRAFT2_1187925 2528344-2529801 -: Glycosyltransferase Family 8 proteinASPNIDRAFT2_1187925ASPNIDRAFT2_1160288 2530803-2532792 +: aspartic protease|hypothetical aspartic proteaseASPNIDRAFT2_1160288ASPNIDRAFT2_39480 2533710-2535100 +: WD40 repeat-like proteinASPNIDRAFT2_39480ASPNIDRAFT2_1187926 2535397-2536945 -: Aldehyde dehydrogenaseASPNIDRAFT2_1187926ASPNIDRAFT2_53077 2537125-2538926 +: CoA-transferase family IIIASPNIDRAFT2_53077ASPNIDRAFT2_1187928 2539214-2541154 +: salicylate hydroxylaseASPNIDRAFT2_1187928ASPNIDRAFT2_1128148 2541123-2545385 -: cytoskeleton assembly control protein Sla2ASPNIDRAFT2_1128148ASPNIDRAFT2_1167986 2545710-2549556 -: hypothetical proteinASPNIDRAFT2_11679862512 kb2516 kb2520 kb2524 kb2528 kb2532 kb2536 kb2540 kb2544 kb2548 kbACJE01000019.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT2513635-2514792 -annotatedASPNIDRAFT2_1178859mating-type protein MAT alpha 1ASPNIDRAFT2_1178859 covers 100% of it on the same strand
APN2flanking_conserved2517073-2519208 -annotatedASPNIDRAFT2_1187921DNA lyase Apn2|Hypothetical proteinASPNIDRAFT2_1187921 covers 100% of it on the same strand
COX13flanking_conserved2519744-2520459 +annotatedASPNIDRAFT2_1147272hypothetical cytochrome C oxidase|Mitochondrial cytochrome c oxidase subunit VIaASPNIDRAFT2_1147272 covers 100% of it on the same strand
MAT1-1-3core_MAT2528233-2528325 -novel—no FungiDB gene overlaps this MATPredict gene
SLA2flanking_conserved2541396-2545220 -annotatedASPNIDRAFT2_1128148cytoskeleton assembly control protein Sla2ASPNIDRAFT2_1128148 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
ASPNIDRAFT2_11879232520689-2523464 -hypothetical protein
ASPNIDRAFT2_11281372524744-2526583 +hypothetical protein
ASPNIDRAFT2_10953642526788-2527207 +hypothetical protein
ASPNIDRAFT2_11281382527162-2527897 +HAD-like protein
ASPNIDRAFT2_11879252528344-2529801 -Glycosyltransferase Family 8 protein
ASPNIDRAFT2_11602882530803-2532792 +aspartic protease|hypothetical aspartic protease
ASPNIDRAFT2_394802533710-2535100 +WD40 repeat-like protein
ASPNIDRAFT2_11879262535397-2536945 -Aldehyde dehydrogenase
ASPNIDRAFT2_530772537125-2538926 +CoA-transferase family III
ASPNIDRAFT2_11879282539214-2541154 +salicylate hydroxylase