MATPredict · mating-type report

ZtriticiIPO323

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:45 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1medium confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

medium confidence
Gene order of the MAT1-1 locus on Ztri_chr_13MAT1-1 locus: genes from left to right on Ztri_chr_13, 616,612 to 623,141: APN2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand).618 kb620 kb622 kb562.3 kb more to contig end →called locusAPN2: conserved flank, 616,612–618,487 (+), identity 94.6%, search hit onlyAPN2MAT1-1-1: core MAT gene, 622,002–623,141 (+), identity 96.1%, search hit onlyMAT1-1-1
Gene order on Ztri_chr_13. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on Ztri_chr_13, 616,286 to 623,467ZtIPO323_043730 612,910-616,351 (-): Anaphase-promoting complex subunit 5 | domain-containing proteinZtIPO323_043730ZtIPO323_043740 616,467-618,592 (+): Endonuclease/Exonuclease/phosphatase family | domain-containing proteinZtIPO323_043740ZtIPO323_043750 620,513-621,557 (-): unspecified productZtIPO323_043750ZtIPO323_043760 622,002-623,141 (+): Mating-type protein MAT-1ZtIPO323_043760
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
Ztri_chr_13:616,612–623,141 · 6.5 kb
Own genes
Ztri_chr_13:616,612–623,141 · 6.5 kb
Locus
Provisional: the call only tied the admission bar, or came from the relaxed pass.
Genes modelled
2 of 2 gene hits
Nearest contig end
562.6 kb
Region (samtools)
Ztri_chr_13:616612-623141
Idiomorph scores
  • MAT1-1 339.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
APN2conserved flankhit onlyDIAMOND, proteome94.6cov 100.0%< 1e-1801,130 bits616,612–618,487 +–1047171_ipo94269_MAT_MAT1-2ZtIPO323_043740
MAT1-1-1core MAThit onlyDIAMOND, proteome96.1cov 60.1%2.3e-119339 bits622,002–623,141 +–1047171_ipo323_MAT_MAT1-1ZtIPO323_043760
SLA2expected, not found–
COX13expected, not found–

Withheld candidate loci 4

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (4).

Show the 4 withheld loci

Withheld loci (4)

familylocationidiomorph genesmodelledreason
MATZtri_chr_1:4,843,711–4,846,107MAT1-2MAT1-2-11too few of the family's genes found
MATZtri_chr_4:2,616,318–2,618,903MAT1-2MAT1-2-11too few of the family's genes found
MATZtri_chr_13:296,366–299,603undeterminedSLA21too few of the family's genes found
MATZtri_chr_13:663,438–664,048undeterminedCOX131too few of the family's genes found

Provenance

Genome file
ZtriticiIPO323.genome.fasta
Assembly
22 contigs · 39.7 Mb · N50 2.7 Mb
Genome SHA-256
99bca327e662b6c68b650f9515785cab4367d8dab3ce745170be65c98f464873
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 93133, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 93133', 'routed_by': 'family taxid 93133 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:44:04Z
Run time
82 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits