YlipolyticaCLIB89W29

What was searched

Routing

Whole phylum. No curated family covers this lineage, so every family of the genome's phylum was searched. Family labels are less reliable here.

Families searched

Ascomycota:MATsc, Ascomycota:MTL

Genetic code

1

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Families searched but not called

Withheld candidate loci 94

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (88); too few of the family's genes found (6).

Provenance

Genome file

YlipolyticaCLIB89W29.genome.fasta

Assembly

7 contigs · 20.5 Mb · N50 3.6 Mb

Genome SHA-256

1c3ea748fffe9e05038727ed30463591916c0bb29153b8e50d4dea8806ac30e8

MATPredict

0.8.1 (v0.8.1, 3a62e6302b)

Database

86f18d232e4fe95d · 185 records

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Parameters

phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 3243772, 'routing_taxid_rank': 'order', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'order taxid 3243772', 'routed_by': 'order taxid 3243772 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0

Run started

2026-11-07T02:43:30Z

Run time

31 s

Files

detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.