VgallopavaCBS43764 Verruconis gallopava strain CBS 43764
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, KN847532:1005911-1031087
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| COX13 | flanking_conserved | 1005911-1006457 - | annotated | PV09_01798 | Cytochrome c oxidase subunit VIa | domain-containing protein | PV09_01798 covers 100% of it on the same strand |
| APN2 | flanking_conserved | 1006767-1008804 + | annotated | PV09_01799 | DNA-(apurinic or apyrimidinic site) endonuclease 2 | PV09_01799 covers 100% of it on the same strand |
| MAT1-1-4 | core_MAT | 1009604-1009765 + | annotated | PV09_01800 | unspecified product | PV09_01800 covers 100% of it on the same strand |
| MAT1-2-1 | core_MAT | 1011049-1011426 - | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| MAT1-1-2 | core_MAT | 1030989-1031087 + | partial | PV09_01810 | Ribosomal protein L21e | domain-containing protein | PV09_01810 overlaps 100% but on the opposite strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| PV09_01801 | 1012212-1012909 + | unspecified product |
| PV09_01802 | 1013476-1016642 + | Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing protein |
| PV09_01803 | 1016813-1018279 - | Rogdi leucine zipper containing protein | domain-containing protein |
| PV09_01804 | 1019083-1020843 + | SUR7/PalI family | domain-containing protein |
| PV09_01805 | 1020975-1021855 - | unspecified product |
| PV09_01806 | 1021860-1024243 - | ubiquitinyl hydrolase 1 |
| PV09_01807 | 1024478-1025991 + | unspecified product |
| PV09_01808 | 1025897-1028388 - | PCI domain | domain-containing protein |
| PV09_01809 | 1028807-1030834 + | Ras family | domain-containing protein |
| PV09_01810 | 1030607-1031746 - | Ribosomal protein L21e | domain-containing protein |