VdahliaeJR2 Verticillium dahliae JR2

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CP009079.1:3830361-3865912

MATPredictFungiDBSLA2 (flanking_conserved) CP009079.1:3848203-3851663 + identity 98.2SLA2MAT1-2-1 (core_MAT) CP009079.1:3859641-3860439 + identity 99.6MAT1-2-1APN2 (flanking_conserved) CP009079.1:3862166-3864535 - identity 100.0APN2COX13 (flanking_conserved) CP009079.1:3865000-3865912 + identity 90.2COX13VDAG_JR2_Chr2g11780a 3826305-3833782 +: Meiotic cell cortex C-terminal pleckstrin homology | domain-containing proteinVDAG_JR2_Chr2g11780aVDAG_JR2_Chr2g11790a 3834143-3837586 +: Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinVDAG_JR2_Chr2g11790aVDAG_JR2_Chr2g11800a 3837796-3843191 -: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymeraseVDAG_JR2_Chr2g11800aVDAG_JR2_Chr2g11810a 3843359-3845025 +: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinVDAG_JR2_Chr2g11810aVDAG_JR2_Chr2g11820a 3845063-3845986 -: Ribosomal protein S4/S9 N-terminal domain | S4 domain | domain-containing proteinVDAG_JR2_Chr2g11820aVDAG_JR2_Chr2g11830a 3846082-3847295 +: Ribosomal protein L21e | domain-containing proteinVDAG_JR2_Chr2g11830aVDAG_JR2_Chr2g11840a 3847927-3851957 +: ANTH domain | I/LWEQ domain | domain-containing proteinVDAG_JR2_Chr2g11840aVDAG_JR2_Chr2g11850a 3856996-3858417 -: unspecified productVDAG_JR2_Chr2g11850aVDAG_JR2_Chr2g11860a 3859536-3860574 +: HMG (high mobility group) box | domain-containing proteinVDAG_JR2_Chr2g11860aVDAG_JR2_Chr2g11870a 3861994-3864600 -: DNA-(apurinic or apyrimidinic site) endonuclease 2VDAG_JR2_Chr2g11870aVDAG_JR2_Chr2g11880a 3864970-3865945 +: Cytochrome c oxidase subunit VIa | domain-containing proteinVDAG_JR2_Chr2g11880aVDAG_JR2_Chr2g11890a 3866015-3868983 -: Anaphase-promoting complex subunit 5 | domain-containing proteinVDAG_JR2_Chr2g11890aVDAG_JR2_Chr2g11900a 3869333-3870874 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinVDAG_JR2_Chr2g11900a3828 kb3832 kb3836 kb3840 kb3844 kb3848 kb3852 kb3856 kb3860 kb3864 kb3868 kbCP009079.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved3848203-3851663 +annotatedVDAG_JR2_Chr2g11840aANTH domain | I/LWEQ domain | domain-containing proteinVDAG_JR2_Chr2g11840a covers 100% of it on the same strand
MAT1-2-1core_MAT3859641-3860439 +annotatedVDAG_JR2_Chr2g11860aHMG (high mobility group) box | domain-containing proteinVDAG_JR2_Chr2g11860a covers 100% of it on the same strand
APN2flanking_conserved3862166-3864535 -annotatedVDAG_JR2_Chr2g11870aDNA-(apurinic or apyrimidinic site) endonuclease 2VDAG_JR2_Chr2g11870a covers 100% of it on the same strand
COX13flanking_conserved3865000-3865912 +annotatedVDAG_JR2_Chr2g11880aCytochrome c oxidase subunit VIa | domain-containing proteinVDAG_JR2_Chr2g11880a covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
VDAG_JR2_Chr2g11780a3826305-3833782 +Meiotic cell cortex C-terminal pleckstrin homology | domain-containing protein
VDAG_JR2_Chr2g11790a3834143-3837586 +Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing protein
VDAG_JR2_Chr2g11800a3837796-3843191 -DNA polymerase zeta catalytic subunit, DNA-directed DNA polymerase
VDAG_JR2_Chr2g11810a3843359-3845025 +Pre-mRNA splicing Prp18-interacting factor | domain-containing protein
VDAG_JR2_Chr2g11820a3845063-3845986 -Ribosomal protein S4/S9 N-terminal domain | S4 domain | domain-containing protein
VDAG_JR2_Chr2g11830a3846082-3847295 +Ribosomal protein L21e | domain-containing protein
VDAG_JR2_Chr2g11850a3856996-3858417 -unspecified product