TvirensGv29-8 Trichoderma virens Gv29-8

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, ABDF02000006:1347050-1360082

MATPredictFungiDBSLA2 (flanking_conserved) ABDF02000006:1347050-1350478 + identity 81.6SLA2COX13 (flanking_conserved) ABDF02000006:1354276-1354995 - identity 62.9COX13APN2 (flanking_conserved) ABDF02000006:1355623-1358037 + identity 88.6APN2MAT1-2-1 (core_MAT) ABDF02000006:1358702-1360082 - identity 55.0MAT1-2-1TRIVIDRAFT_29543 1342272-1343660 +: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinTRIVIDRAFT_29543TRIVIDRAFT_216043 1343811-1344742 -: Ribosomal protein S4/S9 N-terminal domain | S4 domain | domain-containing proteinTRIVIDRAFT_216043TRIVIDRAFT_84001 1344992-1346061 +: Ribosomal protein L21e | domain-containing proteinTRIVIDRAFT_84001TRIVIDRAFT_179842 1346877-1350671 +: ANTH domain | I/LWEQ domain | domain-containing proteinTRIVIDRAFT_179842TRIVIDRAFT_54100 1350782-1353357 -: Anaphase-promoting complex subunit 5 | domain-containing proteinTRIVIDRAFT_54100TRIVIDRAFT_110576 1354061-1355034 -: Cytochrome c oxidase subunit VIa | domain-containing proteinTRIVIDRAFT_110576TRIVIDRAFT_28020 1355623-1358037 +: DNA lyaseTRIVIDRAFT_28020TRIVIDRAFT_60622 1358702-1360082 -: MATa1 mating type proteinTRIVIDRAFT_60622TRIVIDRAFT_221797 1361482-1362266 +: hypothetical proteinTRIVIDRAFT_221797TRIVIDRAFT_221798 1362734-1362946 +: hypothetical proteinTRIVIDRAFT_221798TRIVIDRAFT_110575 1363728-1364816 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinTRIVIDRAFT_1105751344 kb1346 kb1348 kb1350 kb1352 kb1354 kb1356 kb1358 kb1360 kb1362 kb1364 kbABDF02000006
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved1347050-1350478 +annotatedTRIVIDRAFT_179842ANTH domain | I/LWEQ domain | domain-containing proteinTRIVIDRAFT_179842 covers 100% of it on the same strand
COX13flanking_conserved1354276-1354995 -annotatedTRIVIDRAFT_110576Cytochrome c oxidase subunit VIa | domain-containing proteinTRIVIDRAFT_110576 covers 100% of it on the same strand
APN2flanking_conserved1355623-1358037 +annotatedTRIVIDRAFT_28020DNA lyaseTRIVIDRAFT_28020 covers 100% of it on the same strand
MAT1-2-1core_MAT1358702-1360082 -annotatedTRIVIDRAFT_60622MATa1 mating type proteinTRIVIDRAFT_60622 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
TRIVIDRAFT_541001350782-1353357 -Anaphase-promoting complex subunit 5 | domain-containing protein