TrubrumCBS118892 Trichophyton rubrum CBS 118892

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, GG700649:2170556-2181729

MATPredictFungiDBCIMG_00407 (core_MAT) GG700649:2170556-2170783 - identity 30.263CIMG_00407MAT1-2-4 (core_MAT) GG700649:2170673-2170864 - identity 32.812MAT1-2-4MAT1-1-1 (core_MAT) GG700649:2171481-2172684 - identity 50.6MAT1-1-1MAT1-1-4 (core_MAT) GG700649:2173394-2174662 - identity 41.8MAT1-1-4APN2 (flanking_conserved) GG700649:2175427-2177519 - identity 76.6APN2COX13 (flanking_conserved) GG700649:2177761-2178413 + identity 68.8COX13SLA2 (flanking_conserved) GG700649:2178837-2181729 - identity 88.1SLA2TERG_02403 2165082-2166976 +: glycolate oxidase, subunit GlcDTERG_02403TERG_02404 2167525-2168762 +: 40S ribosomal protein S4TERG_02404TERG_02405 2170451-2171354 -: hypothetical proteinTERG_02405TERG_02406 2171481-2172684 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinTERG_02406TERG_02407 2173394-2174662 -: hypothetical proteinTERG_02407TERG_02408 2175427-2177519 -: DNA-(apurinic or apyrimidinic site) endonuclease 2TERG_02408TERG_02409 2177761-2178413 +: Cytochrome c oxidase subunit VIa | domain-containing proteinTERG_02409TERG_02410 2178837-2181729 -: ANTH domain | I/LWEQ domain | domain-containing proteinTERG_02410TERG_02411 2183021-2186418 -: Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing proteinTERG_02411TERG_02412 2186476-2187071 -: Hemerythrin HHE cation binding domain | domain-containing proteinTERG_024122166 kb2168 kb2170 kb2172 kb2174 kb2176 kb2178 kb2180 kb2182 kb2184 kb2186 kbGG700649
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
CIMG_00407core_MAT2170556-2170783 -annotatedTERG_02405hypothetical proteinTERG_02405 covers 100% of it on the same strand
MAT1-2-4core_MAT2170673-2170864 -annotatedTERG_02405hypothetical proteinTERG_02405 covers 100% of it on the same strand
MAT1-1-1core_MAT2171481-2172684 -annotatedTERG_02406Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinTERG_02406 covers 100% of it on the same strand
MAT1-1-4core_MAT2173394-2174662 -annotatedTERG_02407hypothetical proteinTERG_02407 covers 100% of it on the same strand
APN2flanking_conserved2175427-2177519 -annotatedTERG_02408DNA-(apurinic or apyrimidinic site) endonuclease 2TERG_02408 covers 100% of it on the same strand
COX13flanking_conserved2177761-2178413 +annotatedTERG_02409Cytochrome c oxidase subunit VIa | domain-containing proteinTERG_02409 covers 100% of it on the same strand
SLA2flanking_conserved2178837-2181729 -annotatedTERG_02410ANTH domain | I/LWEQ domain | domain-containing proteinTERG_02410 covers 100% of it on the same strand