TreeseiQM6a Trichoderma reesei QM6a

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, GL985061:1417284-1430112

MATPredictFungiDBMAT1-2-1 (core_MAT) GL985061:1417284-1418118 + identity 64.0MAT1-2-1APN2 (flanking_conserved) GL985061:1419113-1421653 - identity 86.4APN2MAT1-2-4 (core_MAT) GL985061:1419713-1420000 - identity 26.263MAT1-2-4COX13 (flanking_conserved) GL985061:1422349-1423094 + identity 65.9COX13SLA2 (flanking_conserved) GL985061:1426629-1430112 - identity 81.6SLA2TRIREDRAFT_76930 1412662-1413930 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinTRIREDRAFT_76930TRIREDRAFT_106181 1414344-1415873 -: predicted proteinTRIREDRAFT_106181TRIREDRAFT_124341 mata1 1417284-1418118 +: mating type protein MATa1TRIREDRAFT_124341 mata1TRIREDRAFT_59147 1419113-1421653 -: DNA lyaseTRIREDRAFT_59147TRIREDRAFT_121275 1422340-1423200 +: Cytochrome c oxidase subunit VIa | domain-containing proteinTRIREDRAFT_121275TRIREDRAFT_59296 1423842-1426418 +: Anaphase-promoting complex subunit 5 | domain-containing proteinTRIREDRAFT_59296TRIREDRAFT_121276 1426496-1430278 -: transmembrane actin-binding-like proteinTRIREDRAFT_121276TRIREDRAFT_121278 1431018-1431860 -: Ribosomal protein L21e | domain-containing proteinTRIREDRAFT_121278TRIREDRAFT_76939 rps9 1432228-1432968 +: ribosomal protein S9, S4 familyTRIREDRAFT_76939 rps9TRIREDRAFT_3419 1433346-1434746 -: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinTRIREDRAFT_34191414 kb1416 kb1418 kb1420 kb1422 kb1424 kb1426 kb1428 kb1430 kb1432 kb1434 kbGL985061
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-2-1core_MAT1417284-1418118 +annotatedTRIREDRAFT_124341 mata1mating type protein MATa1TRIREDRAFT_124341 covers 100% of it on the same strand
APN2flanking_conserved1419113-1421653 -annotatedTRIREDRAFT_59147DNA lyaseTRIREDRAFT_59147 covers 100% of it on the same strand
MAT1-2-4core_MAT1419713-1420000 -annotatedTRIREDRAFT_59147DNA lyaseTRIREDRAFT_59147 covers 100% of it on the same strand
COX13flanking_conserved1422349-1423094 +annotatedTRIREDRAFT_121275Cytochrome c oxidase subunit VIa | domain-containing proteinTRIREDRAFT_121275 covers 100% of it on the same strand
SLA2flanking_conserved1426629-1430112 -annotatedTRIREDRAFT_121276transmembrane actin-binding-like proteinTRIREDRAFT_121276 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
TRIREDRAFT_592961423842-1426418 +Anaphase-promoting complex subunit 5 | domain-containing protein