TmesentericaDSM1558 Tremella mesenterica DSM 1558
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: a Basidiomycota:MAT, confidence high, JH711534:586275-732277
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| PAN6 | flanking_conserved | 586275-588426 - | annotated | TREMEDRAFT_32058 | Pantoate--beta-alanine ligase, pantoate-beta-alanine ligase (AMP-forming) | TREMEDRAFT_32058 covers 100% of it on the same strand |
| MFa | core_MAT | 614935-615057 + | partial | TREMEDRAFT_39597 | DEAD/DEAH box helicase | Helicase conserved C-terminal domain | DBP10CT (NUC160) domain | domain-containing protein | TREMEDRAFT_39597 overlaps 100% but on the opposite strand |
| STE3 | core_MAT | 622978-623980 + | partial | TREMEDRAFT_71885 | non-specific serine/threonine protein kinase | TREMEDRAFT_71885 overlaps 12% but on the opposite strand |
| RPL39 | core_MAT | 731748-732277 - | annotated | TREMEDRAFT_31788 | 60S ribosomal protein L39 | TREMEDRAFT_31788 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| TREMEDRAFT_74134 | 589654-593042 - | hypothetical protein |
| TREMEDRAFT_71878 | 593635-597017 + | ATPase family associated with various cellular activities (AAA) | AAA C-terminal domain | MgsA AAA+ ATPase C terminal | domain-containing protein |
| TREMEDRAFT_74136 | 597214-604837 - | chitin synthase |
| TREMEDRAFT_63150 | 605509-606668 + | RNA recognition motif | domain-containing protein |
| TREMEDRAFT_63151 | 607161-610287 + | Phosphatidate phosphatase APP1, catalytic domain | domain-containing protein |
| TREMEDRAFT_39596 | 612093-614694 + | ubiquitinyl hydrolase 1 |
| TREMEDRAFT_39597 | 614869-617710 - | DEAD/DEAH box helicase | Helicase conserved C-terminal domain | DBP10CT (NUC160) domain | domain-containing protein |
| TREMEDRAFT_74139 | 617855-619947 + | C2H2 type zinc-finger (2 copies) | Zinc-finger double-stranded RNA-binding | domain-containing protein |
| TREMEDRAFT_31906 | 620031-620438 - | Zinc-finger double domain | domain-containing protein |
| TREMEDRAFT_31921 | 621237-621812 - | STE like transcription factor | domain-containing protein |
| TREMEDRAFT_71885 | 623861-627444 - | non-specific serine/threonine protein kinase |
| TREMEDRAFT_57194 | 627625-628692 - | hypothetical protein |
| TREMEDRAFT_57195 | 629504-630551 - | hypothetical protein |
| TREMEDRAFT_69149 | 630904-634021 - | Gamma-glutamyltranspeptidase | domain-containing protein |
| TREMEDRAFT_71888 | 634411-638548 + | Aldehyde dehydrogenase family | domain-containing protein |
| TREMEDRAFT_31780 | 640465-644704 + | PHD-zinc-finger like domain | BAH domain | PHD-finger | domain-containing protein |
| TREMEDRAFT_71889 | 644844-648420 - | Eukaryotic translation initiation factor eIF2A | domain-containing protein |
| TREMEDRAFT_31854 | 648677-652231 - | Glycosyl transferase family group 2 | domain-containing protein |
| TREMEDRAFT_11927 | 654601-658114 + | Glycosyl transferase family group 2 | domain-containing protein |
| TREMEDRAFT_31883 | 658750-661706 + | NADH:flavin oxidoreductase / NADH oxidase family | domain-containing protein |
| TREMEDRAFT_74147 | 662159-666048 - | Tsr1, G-like domain | 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | AARP2CN (NUC121) domain | domain-containing protein |
| TREMEDRAFT_69156 | 666606-672066 - | DNA-directed RNA polymerase |
| TREMEDRAFT_74148 | 675814-679758 + | Fungal Zn(2)-Cys(6) binuclear cluster domain | Fungal specific transcription factor domain | domain-containing protein |
| TREMEDRAFT_32039 | 680132-681540 - | Protein kinase domain | domain-containing protein |
| TREMEDRAFT_71892 | 686031-688283 - | Probable electron transfer flavoprotein subunit alpha, mitochondrial |
| TREMEDRAFT_23695 | 688727-689905 - | hypothetical protein |
| TREMEDRAFT_44531 | 690388-692559 + | hypothetical protein |
| TREMEDRAFT_74150 | 693367-696470 - | Ubiquitin-like modifier-activating enzyme ATG7, Ubiquitin-like modifier-activating enzyme atg7 |
| TREMEDRAFT_63174 | 697018-703031 + | DIL domain | Myosin head (motor domain) | IQ calmodulin-binding motif | domain-containing protein |
| TREMEDRAFT_12167 | 703759-707426 - | BTB/POZ domain | domain-containing protein |
| TREMEDRAFT_69163 | 707718-710104 - | HEC/Ndc80p family | domain-containing protein |
| TREMEDRAFT_63177 | 710359-711708 - | hypothetical protein |
| TREMEDRAFT_63178 | 711918-713246 - | TAP42-like family | domain-containing protein |
| TREMEDRAFT_44537 | 713374-715099 + | 26S proteasome regulatory subunit RPN6 N-terminal domain | 26S proteasome subunit RPN6 C-terminal helix domain | PCI domain | domain-containing protein |
| TREMEDRAFT_31826 | 715266-716509 - | Vacuolar protein sorting-associated protein 26 | domain-containing protein |
| TREMEDRAFT_32011 | 716843-718818 + | Protein kinase domain | domain-containing protein |
| TREMEDRAFT_74152 | 719390-721434 - | Pyridoxal-dependent decarboxylase conserved domain | domain-containing protein |
| TREMEDRAFT_57202 | 721637-722640 + | hypothetical protein |
| TREMEDRAFT_39631 | 722966-727099 + | C2 domain | MUN domain | domain-containing protein |
| TREMEDRAFT_63184 | 727912-731412 + | Fungal specific transcription factor domain | domain-containing protein |