TmarneffeiATCC18224 Talaromyces marneffei ATCC 18224

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, DS995905:732956-755089

MATPredictFungiDBCOX13 (flanking_conserved) DS995905:732956-733641 - identity 76.7COX13APN2 (flanking_conserved) DS995905:734034-736127 + identity 88.6APN2MAT1-2-1 (core_MAT) DS995905:738485-739569 - identity 47.1MAT1-2-1MAT1-2-4 (core_MAT) DS995905:740109-740597 + identity 33.13MAT1-2-4CIMG_00407 (core_MAT) DS995905:740505-740597 + identity 32.258CIMG_00407SLA2 (flanking_conserved) DS995905:744745-748639 - identity 88.8SLA2MAT1-2-10 (core_MAT) DS995905:754925-755089 + identity 34.545MAT1-2-10PMAA_003150 726153-729256 +: MFS sugar transporter, putativePMAA_003150PMAA_003160 728597-730775 -: C6 transcription factor (Gal4), putativePMAA_003160PMAA_003170 731458-732587 +: ThiJ/PfpI family proteinPMAA_003170PMAA_003180 732723-733696 -: cytochrome c oxidase subunit VIa, putativePMAA_003180PMAA_003190 734034-737110 +: DNA lyase Apn2PMAA_003190PMAA_003200 738485-739730 -: mating type protein MAT1-2-1PMAA_003200PMAA_003210 740109-740842 +: mating locus protein, putativePMAA_003210PMAA_003220 744439-748639 -: cytoskeleton assembly control protein Sla2, putativePMAA_003220PMAA_003230 749212-752288 -: Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing proteinPMAA_003230PMAA_003240 752893-754268 -: ankyrin repeat-containing protein, putativePMAA_003240PMAA_003250 754801-758136 -: ubiquitin thiolesterase (OtuB1), putativePMAA_003250728 kb732 kb736 kb740 kb744 kb748 kb752 kb756 kb760 kbDS995905
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved732956-733641 -annotatedPMAA_003180cytochrome c oxidase subunit VIa, putativePMAA_003180 covers 100% of it on the same strand
APN2flanking_conserved734034-736127 +annotatedPMAA_003190DNA lyase Apn2PMAA_003190 covers 100% of it on the same strand
MAT1-2-1core_MAT738485-739569 -annotatedPMAA_003200mating type protein MAT1-2-1PMAA_003200 covers 100% of it on the same strand
MAT1-2-4core_MAT740109-740597 +annotatedPMAA_003210mating locus protein, putativePMAA_003210 covers 100% of it on the same strand
CIMG_00407core_MAT740505-740597 +annotatedPMAA_003210mating locus protein, putativePMAA_003210 covers 100% of it on the same strand
SLA2flanking_conserved744745-748639 -annotatedPMAA_003220cytoskeleton assembly control protein Sla2, putativePMAA_003220 covers 100% of it on the same strand
MAT1-2-10core_MAT754925-755089 +partialPMAA_003250ubiquitin thiolesterase (OtuB1), putativePMAA_003250 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PMAA_003230749212-752288 -Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing protein
PMAA_003240752893-754268 -ankyrin repeat-containing protein, putative
PMAA_003250754801-758136 -ubiquitin thiolesterase (OtuB1), putative