Ssclerotiorum1980UF-70 Sclerotinia sclerotiorum 1980 UF-70

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CP017815:2954649-2971253

MATPredictFungiDBSLA2 (flanking_conserved) CP017815:2954649-2958111 + identity 98.6SLA2MAT1-1-1 (core_MAT) CP017815:2958879-2959632 + identity 99.1MAT1-1-1MAT1-2-10 (core_MAT) CP017815:2960139-2961082 - identity 98.9MAT1-2-10MAT1-2-1 (core_MAT) CP017815:2961572-2962860 + identity 99.7MAT1-2-1MAT1-1-5 (core_MAT) CP017815:2963823-2965125 - identity 100.0MAT1-1-5APN2 (flanking_conserved) CP017815:2968030-2970256 - identity 94.1APN2COX13 (flanking_conserved) CP017815:2970644-2971253 + identity 64.4COX13sscle_02g020220 2944861-2950030 +: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymerasesscle_02g020220sscle_02g020230 2950909-2953971 +: Pleckstrin homology domain | domain-containing proteinsscle_02g020230sscle_02g020240 2954649-2958111 +: I/LWEQ domain | ANTH domain | domain-containing proteinsscle_02g020240sscle_02g020250 2958879-2959632 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinsscle_02g020250sscle_02g020260 2960139-2961082 -: unspecified productsscle_02g020260sscle_02g020270 2961572-2962860 +: HMG (high mobility group) box | domain-containing proteinsscle_02g020270sscle_02g020280 2963823-2965125 -: unspecified productsscle_02g020280sscle_02g020290 2968030-2970256 -: DNA-(apurinic or apyrimidinic site) endonuclease 2sscle_02g020290sscle_02g020300 2970644-2971253 +: Cytochrome c oxidase subunit VIa | domain-containing proteinsscle_02g020300sscle_02g020310 2971603-2974029 -: Anaphase-promoting complex subunit 5 | domain-containing proteinsscle_02g020310sscle_02g020320 2974526-2975396 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinsscle_02g020320sscle_02g020330 2975767-2976751 +: phosphoribosylaminoimidazolesuccinocarboxamide synthasesscle_02g0203302952 kb2956 kb2960 kb2964 kb2968 kb2972 kb2976 kbCP017815
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved2954649-2958111 +annotatedsscle_02g020240I/LWEQ domain | ANTH domain | domain-containing proteinsscle_02g020240 covers 100% of it on the same strand
MAT1-1-1core_MAT2958879-2959632 +annotatedsscle_02g020250Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinsscle_02g020250 covers 100% of it on the same strand
MAT1-2-10core_MAT2960139-2961082 -annotatedsscle_02g020260unspecified productsscle_02g020260 covers 100% of it on the same strand
MAT1-2-1core_MAT2961572-2962860 +annotatedsscle_02g020270HMG (high mobility group) box | domain-containing proteinsscle_02g020270 covers 100% of it on the same strand
MAT1-1-5core_MAT2963823-2965125 -annotatedsscle_02g020280unspecified productsscle_02g020280 covers 100% of it on the same strand
APN2flanking_conserved2968030-2970256 -annotatedsscle_02g020290DNA-(apurinic or apyrimidinic site) endonuclease 2sscle_02g020290 covers 100% of it on the same strand
COX13flanking_conserved2970644-2971253 +annotatedsscle_02g020300Cytochrome c oxidase subunit VIa | domain-containing proteinsscle_02g020300 covers 100% of it on the same strand