MATPredict · mating-type report

ScommuneH4-8

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:39 UTC by MATPredict 0.8.1

Result

Mating-type loci

undeterminedAalphahigh confidenceundeterminedAalphahigh confidenceundeterminedBbetahigh confidence

Called loci 3

undetermined Aalpha family · Basidiomycota

high confidence
Gene order of the undetermined locus on MU410293undetermined locus: genes from left to right on MU410293, 1,244,589 to 1,270,175: Z (core MAT gene, minus strand); HD1 (core MAT gene, minus strand); HD2 (core MAT gene, minus strand); Y (core MAT gene, minus strand).1,245 kb1,250 kb1,255 kb1,260 kb1,265 kb1,270 kb← 1,243.3 kb more to contig endcalled locusZ: core MAT gene, 1,244,589–1,246,544 (-), identity 37.8%, search hit onlyZY: core MAT gene, 1,268,056–1,270,175 (-), identity 59.1%, search hit onlyYHD1: core MAT gene, 1,244,589–1,246,544 (-), identity 38.6%, search hit onlyHD1HD2: core MAT gene, 1,247,393–1,249,973 (-), identity 52.3%, search hit onlyHD2
Gene order on MU410293. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on MU410293, 1,243,309 to 1,271,454SCHCODRAFT_02489147 1,244,589-1,246,544 (-): Homeobox KN domain | domain-containing proteinSCHCODRAFT_02489147SCHCODRAFT_02610278 1,247,160-1,250,025 (-): Homeodomain | domain-containing proteinSCHCODRAFT_02610278SCHCODRAFT_02488787 1,250,283-1,252,277 (+): Homeobox KN domain | domain-containing proteinSCHCODRAFT_02488787SCHCODRAFT_02684088 1,253,363-1,255,767 (+): Homeobox KN domain | domain-containing proteinSCHCODRAFT_02684088SCHCODRAFT_02610293 1,265,810-1,267,737 (+): Homeobox KN domain | domain-containing proteinSCHCODRAFT_02610293SCHCODRAFT_02565082 1,267,935-1,270,260 (-): Homeodomain | domain-containing proteinSCHCODRAFT_02565082SCHCODRAFT_02528500 1,270,522-1,271,844 (-): unspecified productSCHCODRAFT_02528500
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:HD.
Location
MU410293:1,244,589–1,270,175 · 25.6 kb
Own genes
MU410293:1,244,589–1,270,175 · 25.6 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 4 gene hits
Nearest contig end
1.2 Mb
Region (samtools)
MU410293:1244589-1270175

Subloci

sublocusallelelocationgenescompleteness
AalphaundeterminedMU410293:1,244,589–1,270,175Y, Zcomplete
HDundeterminedMU410293:1,244,589–1,270,175HD1, HD2complete

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
Zcore MAThit onlyDIAMOND, proteome37.8cov 9.7%5.6e-1673 bits1,244,589–1,246,544 -–5334_h4-8_Aalpha_4SCHCODRAFT_02489147
HD1core MAThit onlyDIAMOND, proteome38.6cov 12.8%2.0e-2190 bits1,244,589–1,246,544 -–984962_um274_HD_A1SCHCODRAFT_02489147
HD2core MAThit onlyDIAMOND, proteome52.3cov 4.5%2.5e-1674 bits1,247,393–1,249,973 -–5346_a43-b43-okayama-7_HD_A43SCHCODRAFT_02610278
Ycore MAThit onlyDIAMOND, proteome59.1cov 4.7%2.2e-0952 bits1,268,056–1,270,175 -–5334_h4-8_Aalpha_4SCHCODRAFT_02565082

undetermined Aalpha family · Basidiomycota

high confidence
Gene order of the undetermined locus on MU410293undetermined locus: genes from left to right on MU410293, 1,817,709 to 1,827,456: MIP1 (conserved flank, plus strand); Z (core MAT gene, minus strand); HD1 (core MAT gene, minus strand); Y (core MAT gene, plus strand); HD2 (core MAT gene, plus strand).1,818 kb1,820 kb1,822 kb1,824 kb1,826 kb← 1,817.2 kb more to contig endcalled locusZ: core MAT gene, 1,821,007–1,824,096 (-), identity 100.0%, search hit onlyZY: core MAT gene, 1,824,368–1,827,456 (+), identity 100.0%, search hit onlyYMIP1: conserved flank, 1,817,709–1,820,194 (+), identity 75.8%, search hit onlyMIP1HD1: core MAT gene, 1,821,007–1,824,096 (-), identity 26.8%, search hit onlyHD1HD2: core MAT gene, 1,824,368–1,827,456 (+), identity 46.5%, search hit onlyHD2
Gene order on MU410293. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on MU410293, 1,817,222 to 1,827,942SCHCODRAFT_02610964 1,815,128-1,817,407 (+): unspecified productSCHCODRAFT_02610964SCHCODRAFT_02684301 1,817,655-1,820,363 (+): mitochondrial intermediate peptidase mitochondrial precursorSCHCODRAFT_02684301SCHCODRAFT_02696654 1,821,007-1,824,096 (-): mating-type protein A-alpha Z4SCHCODRAFT_02696654SCHCODRAFT_02596714 1,824,368-1,827,456 (+): mating-type protein A-alpha Y4SCHCODRAFT_02596714
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:HD.
Location
MU410293:1,817,709–1,827,456 · 9.7 kb
Own genes
MU410293:1,817,709–1,827,456 · 9.7 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
3 of 5 gene hits
Nearest contig end
1.8 Mb
Region (samtools)
MU410293:1817709-1827456

Subloci

sublocusallelelocationgenescompleteness
AalphaundeterminedMU410293:1,817,709–1,827,456Y, Zcomplete
HDundeterminedMU410293:1,817,709–1,827,456HD1, HD2, MIP1complete

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MIP1conserved flankhit onlyDIAMOND, proteome75.8cov 99.2%< 1e-180985 bits1,817,709–1,820,194 +–2822231_sb25_HD_A1SCHCODRAFT_02684301
Zcore MAThit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,607 bits1,821,007–1,824,096 -–5334_h4-8_Aalpha_4SCHCODRAFT_02696654
HD1core MAThit onlyDIAMOND, proteome26.8cov 28.7%1.4e-1779 bits1,821,007–1,824,096 -–5346_a43-b43-okayama-7_HD_A43SCHCODRAFT_02696654
Ycore MAThit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,586 bits1,824,368–1,827,456 +–5334_h4-8_Aalpha_4SCHCODRAFT_02596714
HD2core MAThit onlyDIAMOND, proteome46.5cov 9.7%2.0e-1779 bits1,824,368–1,827,456 +–5346_a43-b43-okayama-7_HD_A43SCHCODRAFT_02596714

undetermined Bbeta family · Basidiomycota

high confidence
Gene order of the undetermined locus on MU410302undetermined locus: genes from left to right on MU410302, 190,182 to 273,658: bbp2-2 (core MAT gene, plus strand); caax_precursor (core MAT gene, plus strand); bbr2 (core MAT gene, minus strand); bbp2-1 (core MAT gene, minus strand); bbp2_a (core MAT gene, minus strand); fungal_mating_type_pheromone (core MAT gene, minus strand); bbp2_b (core MAT gene, plus strand); bbp2-5 (core MAT gene, plus strand); bbp2-8 (core MAT gene, minus strand); bbp2-6 (core MAT gene, plus strand); bap3-3 (core MAT gene, minus strand); bap3-1 (core MAT gene, minus strand); bar3 (core MAT gene, plus strand); pheromone_receptor (core MAT gene, plus strand).200 kb220 kb240 kb260 kb← 186.0 kb more to contig endcalled locusbbp2-2: core MAT gene, 216,536–216,733 (+), identity 100.0%, search hit onlybbp2-2bbr2: core MAT gene, 218,133–220,277 (-), identity 100.0%, search hit onlybbr2bbp2-1: core MAT gene, 221,326–221,638 (-), identity 100.0%, search hit onlybbp2-1bbp2_a: core MAT gene, 224,353–224,604 (-), identity 100.0%, search hit onlybbp2_abbp2_b: core MAT gene, 227,442–227,732 (+), identity 100.0%, search hit onlybbp2_bbbp2-5: core MAT gene, 230,121–230,399 (+), identity 100.0%, search hit onlybbp2-5bbp2-8: core MAT gene, 232,093–232,374 (-), identity 100.0%, search hit onlybbp2-8bbp2-6: core MAT gene, 233,524–233,781 (+), identity 100.0%, search hit onlybbp2-6bap3-3: core MAT gene, 241,497–241,688 (-), identity 100.0%, search hit onlybap3-3bap3-1: core MAT gene, 245,410–245,586 (-), identity 100.0%, search hit onlybap3-1bar3: core MAT gene, 246,348–248,430 (+), identity 100.0%, search hit onlybar3caax_precursor: core MAT gene, 216,536–216,733 (+), identity 0.0%, search hit onlycaax_precursorfungal_mating_type_pheromone: core MAT gene, 224,356–224,532 (-), identity 40.299%, search hit onlyfungal_mating_type_pheromonepheromone_receptor: core MAT gene, 246,348–248,430 (+), identity 55.4%, search hit onlypheromone_receptor
Gene order on MU410302. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on MU410302, 186,016 to 277,823SCHCODRAFT_02671478 185,327-189,509 (-): unspecified productSCHCODRAFT_02671478SCHCODRAFT_01192520 189,849-192,799 (-): B pheromone receptor-like protein 1SCHCODRAFT_01192520 brl1SCHCODRAFT_02515303 193,555-194,462 (-): unspecified productSCHCODRAFT_02515303SCHCODRAFT_02066065 197,198-198,612 (-): unspecified productSCHCODRAFT_02066065SCHCODRAFT_02638182 199,600-200,278 (-): unspecified productSCHCODRAFT_02638182SCHCODRAFT_02692194 200,379-202,595 (+): MYND finger | domain-containing proteinSCHCODRAFT_02692194SCHCODRAFT_0251504 216,536-216,733 (+): peptide mating pheromone precursor Bbp2-2SCHCODRAFT_0251504 bbp2-2SCHCODRAFT_01238579 217,559-218,045 (-): unspecified productSCHCODRAFT_01238579SCHCODRAFT_01238578 218,046-220,353 (-): pheromone B beta 2 receptorSCHCODRAFT_01238578 bbr2SCHCODRAFT_083222 220,898-221,788 (-): peptide mating pheromone precursor Bbp2-1SCHCODRAFT_083222 bbp2-1SCHCODRAFT_0251507 224,353-224,604 (-): pheromoneSCHCODRAFT_0251507 bbp2SCHCODRAFT_02671487 225,607-225,777 (+): Fungal mating-type pheromone | domain-containing proteinSCHCODRAFT_02671487SCHCODRAFT_02066261 225,834-226,414 (+): unspecified productSCHCODRAFT_02066261SCHCODRAFT_02514483 227,442-227,732 (+): peptide mating pheromone precursor Bbp2-7SCHCODRAFT_02514483 bbp2SCHCODRAFT_02769070 228,629-228,748 (-): unspecified productSCHCODRAFT_02769070SCHCODRAFT_01104024 230,121-230,399 (+): peptide mating pheromone precursor Bbp2-5SCHCODRAFT_01104024 bbp2-5SCHCODRAFT_017250 232,093-232,374 (-): lipopeptide mating pheromone precursor Bbp2-8SCHCODRAFT_017250 bbp2-8SCHCODRAFT_060621 233,524-233,781 (+): lipopeptide mating pheromone precursor Bbp2-6SCHCODRAFT_060621 bbp2-6SCHCODRAFT_01160054 234,286-234,495 (+): unspecified productSCHCODRAFT_01160054SCHCODRAFT_01238661 235,612-236,639 (+): unspecified productSCHCODRAFT_01238661SCHCODRAFT_02588730 239,257-240,151 (+): unspecified productSCHCODRAFT_02588730SCHCODRAFT_0270009 240,602-240,766 (-): unspecified productSCHCODRAFT_0270009SCHCODRAFT_060520 241,497-241,688 (-): lipopeptide mating pheromone precursor Bap3(3)SCHCODRAFT_060520 bap3-3SCHCODRAFT_0270001 242,710-243,055 (+): unspecified productSCHCODRAFT_0270001SCHCODRAFT_060117 245,410-245,586 (-): lipopeptide mating pheromone precursor bap3-1SCHCODRAFT_060117 bap3-1SCHCODRAFT_01034973 246,348-248,430 (+): pheromone B alpha 3 receptorSCHCODRAFT_01034973 bar3SCHCODRAFT_02638232 248,284-249,127 (+): unspecified productSCHCODRAFT_02638232SCHCODRAFT_02638233 249,134-251,627 (+): Zn-dependent exopeptidaseSCHCODRAFT_02638233SCHCODRAFT_02638241 252,548-254,995 (+): unspecified productSCHCODRAFT_02638241SCHCODRAFT_01216023 255,156-257,096 (+): F-box-like | domain-containing proteinSCHCODRAFT_01216023SCHCODRAFT_02638244 256,903-258,163 (+): unspecified productSCHCODRAFT_02638244SCHCODRAFT_01192535 258,203-262,361 (-): unspecified productSCHCODRAFT_01192535SCHCODRAFT_02066417 262,495-263,542 (-): unspecified productSCHCODRAFT_02066417SCHCODRAFT_02638251 264,215-266,242 (-): unspecified productSCHCODRAFT_02638251SCHCODRAFT_02638258 267,878-270,838 (+): Pheromone A receptor | domain-containing proteinSCHCODRAFT_02638258SCHCODRAFT_0258344 271,890-273,658 (+): B pheromone receptor-like protein 1SCHCODRAFT_0258344 brl3SCHCODRAFT_02514378 274,527-275,825 (+): unspecified productSCHCODRAFT_02514378SCHCODRAFT_01238761 275,942-276,276 (+): unspecified productSCHCODRAFT_01238761SCHCODRAFT_02751974 276,308-278,911 (-): unspecified productSCHCODRAFT_02751974
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • The pheromone-precursor gene was found only by a sequence-motif scan (CAAX), with no reference match. Treat this call as unconfirmed.
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:Balpha, Basidiomycota:HD, Basidiomycota:PR.
  • Part of pheromone-receptor array Basidiomycota:PR:MU410302:190182-273658 (5 loci, supported). Arrays hold mating and non-mating receptors, so membership is not evidence of mating function.
Location
MU410302:190,182–273,658 · 83.5 kb
Own genes
MU410302:216,536–248,430 · 31.9 kb · the span runs 51.6 kb beyond these genes
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
8 of 14 gene hits
Nearest contig end
190.2 kb
Region (samtools)
MU410302:190182-273658

Subloci

sublocusallelelocationgenescompleteness
BbetaundeterminedMU410302:190,182–273,658bbr2, bbp2-1, bbp2-2, bbp2-5, bbp2-6, bbp2-8, bbp2_a, bbp2_bcomplete
BalphaundeterminedMU410302:190,182–273,658bar3, bap3-1, bap3-3complete
PRundeterminedMU410302:190,182–273,658pheromone_receptor, fungal_mating_type_pheromone, caax_precursorpartialmissing: pheromone_B43, pheromone_B44

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
bbp2-2core MAThit onlyDIAMOND, proteome100.0cov 100.0%4.1e-33100 bits216,536–216,733 +–5334_h4-8_Bbeta_2SCHCODRAFT_0251504 bbp2-2
caax_precursorcore MATcaax orfmotif scan (CAAX)motif CIIA, 65 aa ORF0.0–216,536–216,733 +–caax_scan:CIIASCHCODRAFT_0251504 bbp2-2
bbr2core MAThit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,139 bits218,133–220,277 -–5334_h4-8_Bbeta_2SCHCODRAFT_01238578 bbr2
bbp2-1core MAThit onlyDIAMOND, proteome100.0cov 100.0%6.4e-48139 bits221,326–221,638 -–5334_h4-8_Bbeta_2SCHCODRAFT_083222 bbp2-1
bbp2_acore MAThit onlyDIAMOND, proteome100.0cov 100.0%1.9e-57163 bits224,353–224,604 -–5334_h4-8_Bbeta_2SCHCODRAFT_0251507 bbp2
fungal_mating_type_pheromonecore MAThit onlytblastn40.3cov 93.0%2.0e-0335 bits224,356–224,532 -–5325_fp-101664-ss1_PR_B1SCHCODRAFT_0251507 bbp2
bbp2_bcore MAThit onlyDIAMOND, proteome100.0cov 100.0%3.7e-70196 bits227,442–227,732 +–5334_h4-8_Bbeta_2SCHCODRAFT_02514483 bbp2
bbp2-5core MAThit onlyDIAMOND, proteome100.0cov 100.0%1.1e-60172 bits230,121–230,399 +–5334_h4-8_Bbeta_2SCHCODRAFT_01104024 bbp2-5
bbp2-8core MAThit onlyDIAMOND, proteome100.0cov 100.0%7.4e-62175 bits232,093–232,374 -–5334_h4-8_Bbeta_2SCHCODRAFT_017250 bbp2-8
bbp2-6core MAThit onlyDIAMOND, proteome100.0cov 100.0%1.6e-50146 bits233,524–233,781 +–5334_h4-8_Bbeta_2SCHCODRAFT_060621 bbp2-6
bap3-3core MAThit onlyDIAMOND, proteome100.0cov 100.0%4.1e-41120 bits241,497–241,688 -–5334_h4-8_Balpha_3SCHCODRAFT_060520 bap3-3
bap3-1core MAThit onlyDIAMOND, proteome100.0cov 100.0%5.7e-39115 bits245,410–245,586 -–5334_h4-8_Balpha_3SCHCODRAFT_060117 bap3-1
bar3core MAThit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,172 bits246,348–248,430 +–5334_h4-8_Balpha_3SCHCODRAFT_01034973 bar3
SCHCODRAFT_02638232
pheromone_receptorcore MAThit onlyDIAMOND, proteome55.4cov 95.6%1.5e-141416 bits246,348–248,430 +–5627_9006-11_PR_B1SCHCODRAFT_01034973 bar3
SCHCODRAFT_02638232
pheromone_receptornot searchable: no reference protein in the database–

Withheld candidate loci 84

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (81); too few of the family's genes found (3).

Show the 84 withheld loci

Withheld loci (84)

familylocationidiomorph genesmodelledreason
HDMU410293:307,087–307,272undeterminedHD20fewer than 2 genes could be modelled
HDMU410293:526,380–526,493undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:671,671–671,766undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:758,476–770,819undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:1,885,801–1,893,286undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:2,261,455–2,261,637undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:3,326,449–3,326,721undeterminedHD20fewer than 2 genes could be modelled
HDMU410293:3,717,447–3,723,981undeterminedHD20fewer than 2 genes could be modelled
HDMU410299:492,314–492,559undeterminedHD10fewer than 2 genes could be modelled
HDMU410299:1,757,475–1,758,647undeterminedHD21fewer than 2 genes could be modelled
HDMU410299:1,864,556–1,864,666undeterminedHD20fewer than 2 genes could be modelled
HDMU410299:2,179,216–2,180,140undeterminedHD10fewer than 2 genes could be modelled
HDMU410299:2,274,461–2,289,390undeterminedHD20fewer than 2 genes could be modelled
HDMU410300:822,251–835,890undeterminedHD10fewer than 2 genes could be modelled
HDMU410300:1,274,561–1,274,734undeterminedHD20fewer than 2 genes could be modelled
HDMU410300:1,728,891–1,729,031undeterminedHD10fewer than 2 genes could be modelled
BalphaMU410300:2,064,654–2,066,557undeterminedbar31fewer than 2 genes could be modelled
HDMU410302:190,182–273,658undeterminedHD10fewer than 2 genes could be modelled
HDMU410302:1,154,785–1,155,102undeterminedHD10fewer than 2 genes could be modelled
HDMU410302:1,503,932–1,506,232undeterminedHD20fewer than 2 genes could be modelled
HDMU410294:1,169,030–1,169,251undeterminedHD10fewer than 2 genes could be modelled
HDMU410294:1,325,629–1,340,837undeterminedHD1, HD20fewer than 2 genes could be modelled
HDMU410294:1,478,502–1,493,999undeterminedHD10fewer than 2 genes could be modelled
HDMU410294:1,827,380–1,827,532undeterminedHD10fewer than 2 genes could be modelled
BalphaMU410294:2,029,409–2,029,498undeterminedbap3-30fewer than 2 genes could be modelled
HDMU410294:2,213,456–2,229,270undeterminedHD20fewer than 2 genes could be modelled
HDMU410294:2,546,645–2,546,851undeterminedHD10fewer than 2 genes could be modelled
HDMU410296:169,922–170,107undeterminedHD10fewer than 2 genes could be modelled
HDMU410296:583,396–583,524undeterminedHD10fewer than 2 genes could be modelled
HDMU410296:1,412,357–1,412,515undeterminedHD20fewer than 2 genes could be modelled
HDMU410296:1,642,406–1,642,624undeterminedHD20fewer than 2 genes could be modelled
HDMU410296:2,022,521–2,022,751undeterminedHD20fewer than 2 genes could be modelled
HDMU410296:2,164,158–2,164,448undeterminedHD10fewer than 2 genes could be modelled
BalphaMU410296:2,393,283–2,393,381undeterminedbap3-30fewer than 2 genes could be modelled
HDMU410296:2,429,947–2,430,054undeterminedHD20fewer than 2 genes could be modelled
HDMU410296:2,678,206–2,678,391undeterminedHD20fewer than 2 genes could be modelled
HDMU410304:620,168–620,413undeterminedHD10fewer than 2 genes could be modelled
HDMU410304:666,991–667,125undeterminedHD20fewer than 2 genes could be modelled
HDMU410304:1,157,472–1,157,576undeterminedHD20fewer than 2 genes could be modelled
HDMU410303:112,138–120,241undeterminedHD20fewer than 2 genes could be modelled
HDMU410303:708,654–730,262undeterminedHD10fewer than 2 genes could be modelled
HDMU410303:821,480–821,629undeterminedHD20fewer than 2 genes could be modelled
HDMU410292:91,931–92,107undeterminedHD20fewer than 2 genes could be modelled
HDMU410292:1,039,918–1,043,307undeterminedHD1, HD20fewer than 2 genes could be modelled
HDMU410292:1,232,528–1,232,827undeterminedHD10fewer than 2 genes could be modelled
HDMU410292:1,694,745–1,716,257undeterminedHD1, HD20fewer than 2 genes could be modelled
HDMU410292:1,742,593–1,742,862undeterminedHD20fewer than 2 genes could be modelled
HDMU410292:2,321,479–2,330,793undeterminedHD10fewer than 2 genes could be modelled
HDMU410292:3,021,639–3,031,150undeterminedHD20fewer than 2 genes could be modelled
HDMU410292:3,339,333–3,339,488undeterminedHD10fewer than 2 genes could be modelled
HDMU410292:4,125,639–4,125,737undeterminedHD10fewer than 2 genes could be modelled
HDMU410297:216,582–216,791undeterminedHD20fewer than 2 genes could be modelled
HDMU410297:289,901–293,740undeterminedHD10fewer than 2 genes could be modelled
HDMU410297:588,581–588,868undeterminedHD20fewer than 2 genes could be modelled
HDMU410297:749,967–750,203undeterminedHD20fewer than 2 genes could be modelled
HDMU410297:1,243,857–1,256,392undeterminedHD20fewer than 2 genes could be modelled
HDMU410297:2,157,143–2,188,178undeterminedHD10fewer than 2 genes could be modelled
HDMU410297:2,398,763–2,399,053undeterminedHD10fewer than 2 genes could be modelled
HDMU410298:1,124,787–1,124,978undeterminedHD20fewer than 2 genes could be modelled
HDMU410298:1,241,771–1,250,304undeterminedHD1, HD20fewer than 2 genes could be modelled
HDMU410298:1,351,533–1,367,313undeterminedHD20fewer than 2 genes could be modelled
HDMU410295:41,913–42,035undeterminedHD10fewer than 2 genes could be modelled
HDMU410295:477,726–477,881undeterminedHD20fewer than 2 genes could be modelled
BalphaMU410295:958,012–958,140undeterminedbap3-30fewer than 2 genes could be modelled
HDMU410295:1,200,051–1,200,254undeterminedHD20fewer than 2 genes could be modelled
HDMU410295:1,893,610–1,893,777undeterminedHD20fewer than 2 genes could be modelled
HDMU410295:2,056,396–2,056,605undeterminedHD10fewer than 2 genes could be modelled
HDMU410295:2,129,103–2,129,306undeterminedHD20fewer than 2 genes could be modelled
HDMU410301:105,513–105,608undeterminedHD20fewer than 2 genes could be modelled
BalphaMU410301:500,245–500,367undeterminedbap3-30fewer than 2 genes could be modelled
HDMU410301:537,864–538,268undeterminedHD10fewer than 2 genes could be modelled
HDMU410301:721,778–721,984undeterminedHD20fewer than 2 genes could be modelled
HDMU410301:1,149,370–1,166,248undeterminedHD20fewer than 2 genes could be modelled
HDMU410306:596,064–596,249undeterminedHD10fewer than 2 genes could be modelled
HDMU410307:20,463–20,654undeterminedHD10fewer than 2 genes could be modelled
HDMU410307:244,885–245,076undeterminedHD10fewer than 2 genes could be modelled
HDMU410307:285,101–285,337undeterminedHD20fewer than 2 genes could be modelled
HDMU410307:543,743–543,958undeterminedHD20fewer than 2 genes could be modelled
HDMU410309:324,170–324,412undeterminedHD20fewer than 2 genes could be modelled
HDMU410309:370,895–371,188undeterminedHD10fewer than 2 genes could be modelled
HDMU410308:400,791–400,952undeterminedHD10fewer than 2 genes could be modelled
HDMU410293:2,666,030–2,667,009undeterminedbeta_fg1too few of the family's genes found
PRMU410300:2,064,654–2,066,557undeterminedpheromone_receptor1too few of the family's genes found
BbetaMU410300:2,064,654–2,066,557undeterminedbbr21too few of the family's genes found

Provenance

Genome file
ScommuneH4-8.genome.fasta
Assembly
25 contigs · 38.7 Mb · N50 2.6 Mb
Genome SHA-256
d96c7088c0a7b91cf34bc3aa8c133109258cbb3c5037bdccec765357a05a816e
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'genus', 'routing_taxid': 5332, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 5332', 'routed_by': 'family taxid 5332 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:37:04Z
Run time
172 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits