ScerevisiaeS288C Saccharomyces cerevisiae S288C Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, BK006937:12386-13809 MATPredict FungiDB MATA2 (core_MAT) BK006937:12386-13018 - identity 100.0 MATA2 MATALPHA2 (core_MAT) BK006937:12386-13018 - identity 100.0 MATALPHA2 MATALPHA1 (core_MAT) BK006937:13282-13809 + identity 100.0 MATALPHA1 YCL073C GEX1 6479-8326 -: glutathione exchanger YCL073C GEX1 YCL069W VBA3 9706-11082 +: basic amino acid transporter YCL069W VBA3 YCL068C 11503-12285 -: hypothetical protein YCL068C YCL067C HMLALPHA2 12386-13018 -: homeodomain mating type protein alpha2 YCL067C HMLALPHA2 YCL066W HMLALPHA1 13282-13809 +: transcriptional co-activator mating type protein alpha YCL066W HMLALPHA1 YCL064C CHA1 15798-16880 -: L-serine/L-threonine ammonia-lyase CHA1 YCL064C CHA1 YCL063W VAC17 17290-18561 +: Vac17p YCL063W VAC17 8 kb 9 kb 10 kb 11 kb 12 kb 13 kb 14 kb 15 kb 16 kb 17 kb 18 kb BK006937 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 12386-13018 - annotated YCL067C HMLALPHA2 homeodomain mating type protein alpha2 YCL067C covers 100% of it on the same strand MATALPHA2 core_MAT 12386-13018 - annotated YCL067C HMLALPHA2 homeodomain mating type protein alpha2 YCL067C covers 100% of it on the same strand MATALPHA1 core_MAT 13282-13809 + annotated YCL066W HMLALPHA1 transcriptional co-activator mating type protein alpha YCL066W covers 100% of it on the same strand
Ascomycota_MATsc_1: MATalpha Ascomycota:MATsc, confidence medium, BK006937:199546-200969 MATPredict FungiDB MATA2 (core_MAT) BK006937:199546-200178 - identity 100.0 MATA2 MATALPHA2 (core_MAT) BK006937:199546-200178 - identity 100.0 MATALPHA2 MATALPHA1 (core_MAT) BK006937:200442-200969 + identity 100.0 MATALPHA1 YCR037C PHO87 194414-197185 -: SPX domain-containing inorganic phosphate transporter YCR037C PHO87 YCR038C BUD5 197621-199549 -: Ras family guanine nucleotide exchange factor BUD5 YCR038C BUD5 YCR039C MATALPHA2 199546-200178 -: homeodomain mating type protein alpha2 YCR039C MATALPHA2 YCR040W MATALPHA1 200442-200969 +: transcriptional co-activator mating type protein alpha YCR040W MATALPHA1 YCR041W 200911-201243 +: hypothetical protein YCR041W YCR042C TAF2 201174-205397 -: Taf2p YCR042C TAF2 195 kb 196 kb 197 kb 198 kb 199 kb 200 kb 201 kb 202 kb 203 kb 204 kb 205 kb BK006937 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 199546-200178 - annotated YCR039C MATALPHA2 homeodomain mating type protein alpha2 YCR039C covers 100% of it on the same strand MATALPHA2 core_MAT 199546-200178 - annotated YCR039C MATALPHA2 homeodomain mating type protein alpha2 YCR039C covers 100% of it on the same strand MATALPHA1 core_MAT 200442-200969 + annotated YCR040W MATALPHA1 transcriptional co-activator mating type protein alpha YCR040W covers 100% of it on the same strand
Ascomycota_MATsc_2: MATa Ascomycota:MATsc, confidence high, BK006937:293179-294494 MATPredict FungiDB MATA2 (core_MAT) BK006937:293179-293538 - identity 100.0 MATA2 MATALPHA2 (core_MAT) BK006937:293179-293538 - identity 100.0 MATALPHA2 MATA1 (core_MAT) BK006937:293835-294321 + identity 100.0 MATA1 MATALPHA1 (core_MAT) BK006937:294375-294494 + identity 95.0 MATALPHA1 YCR095C OCA4 288170-289258 -: Oca4p YCR095C OCA4 YCR095W-A 289639-289797 +: hypothetical protein YCR095W-A YCR096C HMRA2 293179-293538 -: homeodomain mating type protein a2 YCR096C HMRA2 YCR097W HMRA1 293835-294321 +: Hmra1p YCR097W HMRA1 tT(AGU)C 295484-295556 +: tRNA-Thr tT(AGU)C YCR098C GIT1 297049-298605 -: Git1p YCR098C GIT1 289 kb 290 kb 291 kb 292 kb 293 kb 294 kb 295 kb 296 kb 297 kb 298 kb 299 kb BK006937 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why MATA2 core_MAT 293179-293538 - annotated YCR096C HMRA2 homeodomain mating type protein a2 YCR096C covers 100% of it on the same strand MATALPHA2 core_MAT 293179-293538 - annotated YCR096C HMRA2 homeodomain mating type protein a2 YCR096C covers 100% of it on the same strand MATA1 core_MAT 293835-294321 + annotated YCR097W HMRA1 Hmra1p YCR097W covers 100% of it on the same strand MATALPHA1 core_MAT 294375-294494 + novel — no FungiDB gene overlaps this MATPredict gene