RtoruloidesNBRC0880 Rhodotorula toruloides NBRC 0880 Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
Basidiomycota_redHD_0: undetermined Basidiomycota:redHD, confidence high, LCTV02000005:1270620-1276279 MATPredict FungiDB HD1 (core_MAT) LCTV02000005:1270620-1271852 - identity 100.0 HD1 HD2 (core_MAT) LCTV02000005:1272303-1276279 + identity 98.5 HD2 AAT19DRAFT_14300 1263880-1265915 -: unspecified product AAT19DRAFT_14300 AAT19DRAFT_14301 1266634-1268880 +: unspecified product AAT19DRAFT_14301 AAT19DRAFT_14302 1268889-1270479 -: Mitochondrial carrier protein | domain-containing protein AAT19DRAFT_14302 AAT19DRAFT_14303 1270620-1271852 -: Homeobox KN domain | domain-containing protein AAT19DRAFT_14303 AAT19DRAFT_14304 1272303-1276279 +: Proteophosphoglycan 5 AAT19DRAFT_14304 AAT19DRAFT_14305 1276566-1277864 +: unspecified product AAT19DRAFT_14305 AAT19DRAFT_14306 1278732-1279189 +: unspecified product AAT19DRAFT_14306 AAT19DRAFT_14307 1279291-1281884 -: Proteophosphoglycan 5 AAT19DRAFT_14307 1266 kb 1268 kb 1270 kb 1272 kb 1274 kb 1276 kb 1278 kb 1280 kb LCTV02000005 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why HD1 core_MAT 1270620-1271852 - annotated AAT19DRAFT_14303 Homeobox KN domain | domain-containing protein AAT19DRAFT_14303 covers 100% of it on the same strand HD2 core_MAT 1272303-1276279 + annotated AAT19DRAFT_14304 Proteophosphoglycan 5 AAT19DRAFT_14304 covers 100% of it on the same strand
Basidiomycota_redPR_1: A2 Basidiomycota:redPR, confidence high, LCTV02000013:476602-479053 MATPredict FungiDB STE3a2 (core_MAT) LCTV02000013:476602-477940 - identity 100.0 STE3a2 RibL6 (flanking_conserved) LCTV02000013:478240-479053 - identity 60.6 RibL6 AAT19DRAFT_10622 470037-471750 +: defective in Cullin neddylation protein 1 AAT19DRAFT_10622 AAT19DRAFT_10623 471819-472358 +: Rhodoturucine A AAT19DRAFT_10623 AAT19DRAFT_10624 472511-475600 -: Armadillo-type fold AAT19DRAFT_10624 AAT19DRAFT_10625 475643-476566 +: Like-Sm (LSM) domain-containing protein AAT19DRAFT_10625 AAT19DRAFT_10626 476567-478033 -: pheromone receptor mating-type A2 AAT19DRAFT_10626 AAT19DRAFT_10627 478240-479053 -: putative ribosomal protein L6 AAT19DRAFT_10627 AAT19DRAFT_10628 479323-480652 +: DNA-directed RNA polymerases I and III subunit RPAC1 AAT19DRAFT_10628 AAT19DRAFT_10629 481002-482394 +: OST48 middle domain | OST48, N-terminal domain | domain-containing protein AAT19DRAFT_10629 AAT19DRAFT_10630 482575-483044 -: putative mitochondrial ribosomal protein S19 AAT19DRAFT_10630 AAT19DRAFT_10631 484011-485260 +: 60S ribosomal protein L20A AAT19DRAFT_10631 472 kb 474 kb 476 kb 478 kb 480 kb 482 kb 484 kb LCTV02000013 MATPredict gene Role Coordinates Verdict FungiDB gene FungiDB product Why STE3a2 core_MAT 476602-477940 - annotated AAT19DRAFT_10626 pheromone receptor mating-type A2 AAT19DRAFT_10626 covers 100% of it on the same strand RibL6 flanking_conserved 478240-479053 - annotated AAT19DRAFT_10627 putative ribosomal protein L6 AAT19DRAFT_10627 covers 100% of it on the same strand