MATPredict · mating-type report

RmelleaRicmel1

MAT locus above the FungiDB annotation (gene by gene)

Basidiomycota

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:52 UTC by MATPredict 0.8.1

Result

Mating-type loci

undeterminedHDhigh confidenceundeterminedHDhigh confidenceundeterminedPRmedium confidenceundeterminedPRmedium confidenceundeterminedPRmedium confidence

Called loci 5

undetermined HD family · Basidiomycota

high confidence
Gene order of the undetermined locus on ML170157undetermined locus: genes from left to right on ML170157, 65,039 to 71,749: MIP1 (conserved flank, plus strand); HD1 (core MAT gene, minus strand); HD2 (core MAT gene, plus strand).66 kb68 kb70 kb72 kb← 64.7 kb more to contig endcalled locusMIP1: conserved flank, 65,039–67,551 (+), identity 72.7%, search hit onlyMIP1HD1: core MAT gene, 67,711–69,936 (-), identity 35.4%, search hit onlyHD1HD2: core MAT gene, 70,098–71,749 (+), identity 28.9%, search hit onlyHD2
Gene order on ML170157. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML170157, 64,703 to 72,084BD410DRAFT_737503 64,994-67,631 (+): mitochondrial intermediate peptidaseBD410DRAFT_737503BD410DRAFT_780788 67,558-70,004 (-): Homeobox KN domain | C-terminal domain of homeodomain 1 | domain-containing proteinBD410DRAFT_780788BD410DRAFT_834430 70,098-71,749 (+): Homeodomain | domain-containing proteinBD410DRAFT_834430
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:Aalpha, Basidiomycota:bLocus.
Location
ML170157:65,039–71,749 · 6.7 kb
Own genes
ML170157:65,039–71,749 · 6.7 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
3 of 3 gene hits
Nearest contig end
65.0 kb
Region (samtools)
ML170157:65039-71749

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MIP1conserved flankhit onlyDIAMOND, proteome72.7cov 99.5%< 1e-180924 bits65,039–67,551 +–984962_um274_HD_A1BD410DRAFT_737503
HD1core MAThit onlyDIAMOND, proteome35.4cov 20.6%9.9e-2396 bits67,711–69,936 -–192523_h97_HD_A1BD410DRAFT_780788
HD2core MAThit onlyDIAMOND, proteome28.9cov 12.3%1.9e-2396 bits70,098–71,749 +–5346_a43-b43-okayama-7_HD_A43BD410DRAFT_834430

undetermined HD family · Basidiomycota

high confidence
Gene order of the undetermined locus on ML170158undetermined locus: genes from left to right on ML170158, 826,019 to 838,481: HD2 (core MAT gene, minus strand); HD1 (core MAT gene, minus strand); beta_fg (conserved flank, minus strand).826 kb828 kb830 kb832 kb834 kb836 kb838 kb654.3 kb more to contig end →called locusHD2: core MAT gene, 826,019–828,339 (-), identity 33.14%, gene modelHD2HD1: core MAT gene, 826,558–828,870 (-), identity 20.9%, search hit onlyHD1beta_fg: conserved flank, 835,714–838,481 (-), identity 42.5%, search hit onlybeta_fg
Gene order on ML170158. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML170158, 825,397 to 839,104BD410DRAFT_894130 823,984-826,220 (-): RNI-like proteinBD410DRAFT_894130BD410DRAFT_894131 826,380-828,870 (-): Mating-type protein beta 1 | Homeobox KN domain | domain-containing proteinBD410DRAFT_894131BD410DRAFT_781957 828,917-830,925 (+): Homeodomain | domain-containing proteinBD410DRAFT_781957BD410DRAFT_835266 831,768-835,129 (+): nucleotide-diphospho-sugar transferaseBD410DRAFT_835266BD410DRAFT_835267 835,714-838,481 (-): Domain of unknown function (DUF7721) | Family of unknown function (DUF6534) | domain-containing proteinBD410DRAFT_835267BD410DRAFT_824773 838,925-840,143 (+): unspecified productBD410DRAFT_824773
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • gene model
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:Aalpha, Basidiomycota:bLocus.
Location
ML170158:826,019–838,481 · 12.5 kb
Own genes
ML170158:826,019–838,481 · 12.5 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
3 of 3 gene hits
Nearest contig end
654.9 kb
Region (samtools)
ML170158:826019-838481

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
HD2core MATgene modelexonerate33.1cov 17.2%5.3e-1787 bits826,019–828,339 -25346_a43-b43-okayama-7_HD_A43BD410DRAFT_894130
BD410DRAFT_894131
HD1core MAThit onlyDIAMOND, proteome20.9cov 34.7%3.2e-2191 bits826,558–828,870 -–2822231_sb25_HD_A1BD410DRAFT_894131
beta_fgconserved flankhit onlyDIAMOND, proteome42.5cov 97.3%3.8e-48161 bits835,714–838,481 -–192523_h97_HD_A1BD410DRAFT_835267

undetermined PR family · Basidiomycota

medium confidence
Gene order of the undetermined locus on ML170160undetermined locus: genes from left to right on ML170160, 441,810 to 480,733: caax_precursor (core MAT gene, plus strand); pheromone_receptor (core MAT gene, plus strand).440 kb450 kb460 kb470 kb480 kb← 439.9 kb more to contig endcalled locuscaax_precursor: core MAT gene, 465,840–465,971 (+), identity 0.0%, search hit onlycaax_precursorpheromone_receptor: core MAT gene, 467,182–468,418 (+), identity 60.5%, search hit onlypheromone_receptor
Gene order on ML170160. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML170160, 439,863 to 482,681BD410DRAFT_714996 438,120-440,249 (+): tubulin nucleotide-binding domain-like proteinBD410DRAFT_714996BD410DRAFT_741238 441,670-443,644 (+): STE3-domain-containing proteinBD410DRAFT_741238BD410DRAFT_836029 443,868-444,742 (-): unspecified productBD410DRAFT_836029BD410DRAFT_783028 444,563-447,000 (+): CCR4-NOT transcription complex subunit 11 | domain-containing proteinBD410DRAFT_783028BD410DRAFT_741245 446,691-450,620 (-): Pkinase-domain-containing proteinBD410DRAFT_741245BD410DRAFT_825383 451,067-452,210 (-): unspecified productBD410DRAFT_825383BD410DRAFT_825384 453,051-454,344 (-): PH domain | domain-containing proteinBD410DRAFT_825384BD410DRAFT_800026 455,287-456,388 (-): P21-Rho-binding domain | domain-containing proteinBD410DRAFT_800026BD410DRAFT_763145 457,275-457,986 (-): ribosomal protein S19/S15BD410DRAFT_763145BD410DRAFT_825386 458,038-459,463 (+): unspecified productBD410DRAFT_825386BD410DRAFT_763147 461,180-463,358 (+): STE3-domain-containing proteinBD410DRAFT_763147BD410DRAFT_800030 463,744-465,368 (+): STE3-domain-containing proteinBD410DRAFT_800030BD410DRAFT_715216 467,182-468,418 (+): fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_715216BD410DRAFT_741253 469,941-471,858 (+): STE3-domain-containing proteinBD410DRAFT_741253BD410DRAFT_783040 472,365-473,921 (+): PCI domain | PSD13 N-terminal repeats | domain-containing proteinBD410DRAFT_783040BD410DRAFT_800034 474,136-476,913 (-): Myb-like DNA-binding domain | domain-containing proteinBD410DRAFT_800034BD410DRAFT_714990 477,262-482,666 (-): SNF2-related domain | Zinc finger, C3HC4 type (RING finger) | domain-containing proteinBD410DRAFT_714990
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • The pheromone-precursor gene was found only by a sequence-motif scan (CAAX), with no reference match. Treat this call as unconfirmed.
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:Balpha, Basidiomycota:aLocus.
  • Part of pheromone-receptor array Basidiomycota:PR:ML170160:441810-471607 (5 loci, supported). Arrays hold mating and non-mating receptors, so membership is not evidence of mating function.
Location
ML170160:441,810–480,733 · 38.9 kb
Own genes
ML170160:465,840–468,418 · 2.6 kb · the span runs 36.3 kb beyond these genes
Supported span
ML170160:441,810–471,607 · 29.8 kb · 9.1 kb of the reported span rests only on hits below 33 bits
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
441.8 kb
Region (samtools)
ML170160:441810-480733

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
caax_precursorcore MATcaax orfmotif scan (CAAX)motif CVVA, 43 aa ORF0.0–465,840–465,971 +–caax_scan:CVVAnone
pheromone_receptorcore MAThit onlyDIAMOND, proteome60.5cov 95.1%1.3e-140399 bits467,182–468,418 +–5627_9006-11_PR_B1BD410DRAFT_715216
pheromone_B43expected, not found–
pheromone_B44expected, not found–
fungal_mating_type_pheromoneexpected, not found–

undetermined PR family · Basidiomycota

medium confidence
Gene order of the undetermined locus on ML170166undetermined locus: genes from left to right on ML170166, 471,767 to 492,287: caax_precursor (core MAT gene, minus strand); pheromone_receptor (core MAT gene, minus strand).475 kb480 kb485 kb490 kb283.8 kb more to contig end →called locuscaax_precursor: core MAT gene, 471,767–471,982 (-), identity 0.0%, search hit onlycaax_precursorpheromone_receptor: core MAT gene, 474,425–475,961 (-), identity 50.6%, search hit onlypheromone_receptor
Gene order on ML170166. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML170166, 470,740 to 493,314BD410DRAFT_745226 474,173-476,340 (-): STE3-domain-containing proteinBD410DRAFT_745226BD410DRAFT_896768 477,661-478,975 (+): unspecified productBD410DRAFT_896768BD410DRAFT_786087 479,937-482,284 (-): Ribokinase-like proteinBD410DRAFT_786087BD410DRAFT_896770 483,896-486,300 (-): unspecified productBD410DRAFT_896770BD410DRAFT_896771 486,349-488,224 (-): WD40 repeat-like proteinBD410DRAFT_896771BD410DRAFT_786090 488,606-490,875 (+): glucose-6-phosphate isomeraseBD410DRAFT_786090BD410DRAFT_745234 491,285-493,005 (-): ankyrinBD410DRAFT_745234BD410DRAFT_786092 493,117-494,771 (-): ankyrinBD410DRAFT_786092
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • The pheromone-precursor gene was found only by a sequence-motif scan (CAAX), with no reference match. Treat this call as unconfirmed.
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:HD, Basidiomycota:Balpha, Basidiomycota:aLocus.
  • Part of pheromone-receptor array Basidiomycota:PR:ML170166:474425-475961 (1 locus, unsupported). Arrays hold mating and non-mating receptors, so membership is not evidence of mating function.
Location
ML170166:471,767–492,287 · 20.5 kb
Own genes
ML170166:471,767–475,961 · 4.2 kb · the span runs 16.3 kb beyond these genes
Supported span
ML170166:471,767–475,961 · 4.2 kb · 16.3 kb of the reported span rests only on hits below 33 bits
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
284.9 kb
Region (samtools)
ML170166:471767-492287

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
caax_precursorcore MATcaax orfmotif scan (CAAX)motif CVIA, 71 aa ORF0.0–471,767–471,982 -–caax_scan:CVIAnone
pheromone_receptorcore MAThit onlyDIAMOND, proteome50.6cov 97.3%1.3e-107319 bits474,425–475,961 -–5627_9006-11_PR_B1BD410DRAFT_745226
pheromone_B43expected, not found–
pheromone_B44expected, not found–
fungal_mating_type_pheromoneexpected, not found–

undetermined PR family · Basidiomycota

medium confidence
Gene order of the undetermined locus on ML170195undetermined locus: genes from left to right on ML170195, 29,092 to 76,120: caax_precursor (core MAT gene, minus strand); pheromone_receptor (core MAT gene, minus strand).30 kb40 kb50 kb60 kb70 kb← 26.7 kb more to contig endcalled locuscaax_precursor: core MAT gene, 29,092–29,202 (-), identity 0.0%, search hit onlycaax_precursorpheromone_receptor: core MAT gene, 60,816–61,933 (-), identity 53.7%, search hit onlypheromone_receptor
Gene order on ML170195. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML170195, 26,738 to 78,469BD410DRAFT_726943 25,885-28,070 (-): Uncharacterised protein family, YAP/Alf4/glomulin | domain-containing proteinBD410DRAFT_726943BD410DRAFT_751961 29,457-31,454 (-): STE3-domain-containing proteinBD410DRAFT_751961BD410DRAFT_726969 33,069-36,201 (-): Plavaka transposase | domain-containing proteinBD410DRAFT_726969BD410DRAFT_841927 36,344-38,601 (+): unspecified productBD410DRAFT_841927BD410DRAFT_805620 39,060-40,257 (-): STE3-domain-containing proteinBD410DRAFT_805620BD410DRAFT_805621 43,235-43,841 (-): unspecified productBD410DRAFT_805621BD410DRAFT_841929 43,878-44,419 (-): fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_841929BD410DRAFT_805622 44,766-45,846 (+): unspecified productBD410DRAFT_805622BD410DRAFT_815881 46,503-47,880 (-): STE3-domain-containing proteinBD410DRAFT_815881BD410DRAFT_432256 50,283-52,120 (-): STE3-domain-containing proteinBD410DRAFT_432256BD410DRAFT_791947 54,499-55,917 (+): Protein of unknown function (DUF1275) | domain-containing proteinBD410DRAFT_791947BD410DRAFT_432266 55,813-57,588 (-): STE3-domain-containing proteinBD410DRAFT_432266BD410DRAFT_791949 57,937-58,364 (-): unspecified productBD410DRAFT_791949BD410DRAFT_432347 58,625-59,564 (-): putative pheromone receptor STE3.2BD410DRAFT_432347BD410DRAFT_727008 60,816-61,933 (-): fungal pheromone STE3G-protein-coupled receptorBD410DRAFT_727008BD410DRAFT_432526 67,126-69,503 (+): alpha/beta-hydrolaseBD410DRAFT_432526BD410DRAFT_432547 69,876-71,529 (-): STE3-domain-containing proteinBD410DRAFT_432547BD410DRAFT_876190 72,684-74,060 (-): pheromone receptorBD410DRAFT_876190BD410DRAFT_773762 74,583-76,620 (-): STE3-domain-containing proteinBD410DRAFT_773762BD410DRAFT_900101 76,680-79,165 (+): MYND finger | domain-containing proteinBD410DRAFT_900101
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • The pheromone-precursor gene was found only by a sequence-motif scan (CAAX), with no reference match. Treat this call as unconfirmed.
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
  • The same genes also match: Basidiomycota:Balpha, Basidiomycota:aLocus, Basidiomycota:bLocus.
  • Part of pheromone-receptor array Basidiomycota:PR:ML170195:29616-76120 (10 loci, supported). Arrays hold mating and non-mating receptors, so membership is not evidence of mating function.
Location
ML170195:29,092–76,120 · 47.0 kb
Own genes
ML170195:29,092–61,933 · 32.8 kb · the span runs 14.2 kb beyond these genes
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
29.1 kb
Region (samtools)
ML170195:29092-76120

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
caax_precursorcore MATcaax orfmotif scan (CAAX)motif CIIA, 36 aa ORF0.0–29,092–29,202 -–caax_scan:CIIAnone
pheromone_receptorcore MAThit onlyDIAMOND, proteome53.7cov 95.6%2.8e-117338 bits60,816–61,933 -–5627_9006-11_PR_B1BD410DRAFT_727008
pheromone_B43expected, not found–
pheromone_B44expected, not found–
fungal_mating_type_pheromoneexpected, not found–

Withheld candidate loci 238

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (202); too few of the family's genes found (36).

Show the 238 withheld loci

Withheld loci (238)

familylocationidiomorph genesmodelledreason
bLocusML170156:123,057–123,191undeterminedbW0fewer than 2 genes could be modelled
HDML170156:730,978–743,610undeterminedHD20fewer than 2 genes could be modelled
bLocusML170156:730,978–743,610undeterminedbW0fewer than 2 genes could be modelled
bLocusML170156:791,451–794,421undeterminedbW0fewer than 2 genes could be modelled
bLocusML170156:1,397,298–1,397,483undeterminedbW0fewer than 2 genes could be modelled
bLocusML170156:1,525,358–1,525,477undeterminedbW0fewer than 2 genes could be modelled
HDML170156:1,637,819–1,638,007undeterminedHD20fewer than 2 genes could be modelled
bLocusML170156:1,761,446–1,761,550undeterminedbW0fewer than 2 genes could be modelled
bLocusML170156:1,824,317–1,824,493undeterminedbW0fewer than 2 genes could be modelled
AalphaML170157:65,039–71,749undeterminedY, Z0fewer than 2 genes could be modelled
bLocusML170157:65,039–71,749undeterminedbE, bW1fewer than 2 genes could be modelled
MATML170157:65,039–71,749alphaSXI10fewer than 2 genes could be modelled
bLocusML170157:540,775–541,131undeterminedbW0fewer than 2 genes could be modelled
bLocusML170157:641,323–666,413undeterminedbW0fewer than 2 genes could be modelled
bLocusML170157:756,620–767,301undeterminedbW0fewer than 2 genes could be modelled
bLocusML170158:200,121–200,216undeterminedbW0fewer than 2 genes could be modelled
bLocusML170158:295,997–296,140undeterminedbW0fewer than 2 genes could be modelled
AalphaML170158:826,558–838,481undeterminedZ0fewer than 2 genes could be modelled
bLocusML170158:826,558–838,481undeterminedbE1fewer than 2 genes could be modelled
MATML170158:826,558–838,481alphaSXI10fewer than 2 genes could be modelled
HDML170158:1,100,028–1,101,091undeterminedHD21fewer than 2 genes could be modelled
bLocusML170158:1,100,028–1,101,091undeterminedbW0fewer than 2 genes could be modelled
bLocusML170158:1,185,540–1,186,675undeterminedbE1fewer than 2 genes could be modelled
bLocusML170158:1,260,656–1,260,751undeterminedbW0fewer than 2 genes could be modelled
HDML170160:2,110–2,334undeterminedHD10fewer than 2 genes could be modelled
HDML170160:254,098–254,235undeterminedHD10fewer than 2 genes could be modelled
BalphaML170160:441,810–480,733undeterminedbar31fewer than 2 genes could be modelled
aLocusML170160:441,810–480,733undeterminedpra11fewer than 2 genes could be modelled
MATML170160:441,810–480,733undeterminedSTE31fewer than 2 genes could be modelled
BbetaML170160:441,810–480,733undeterminedbbr2, bbp2-51fewer than 2 genes could be modelled
BalphaML170160:561,083–565,292undeterminedbar31fewer than 2 genes could be modelled
aLocusML170160:561,083–565,292undeterminedpra11fewer than 2 genes could be modelled
MATML170160:561,083–565,292undeterminedSTE31fewer than 2 genes could be modelled
PRML170160:561,083–565,292undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170160:561,083–565,292undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170160:645,966–647,225undeterminedbar31fewer than 2 genes could be modelled
aLocusML170160:645,966–647,225undeterminedpra11fewer than 2 genes could be modelled
MATML170160:645,966–647,225undeterminedSTE30fewer than 2 genes could be modelled
PRML170160:645,966–647,225undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170160:645,966–647,225undeterminedbbr21fewer than 2 genes could be modelled
bLocusML170160:731,345–731,470undeterminedbW0fewer than 2 genes could be modelled
bLocusML170160:850,044–850,163undeterminedbW0fewer than 2 genes could be modelled
HDML170160:1,080,621–1,080,740undeterminedHD20fewer than 2 genes could be modelled
HDML170161:165,658–165,840undeterminedHD20fewer than 2 genes could be modelled
bLocusML170161:218,911–235,920undeterminedbW0fewer than 2 genes could be modelled
PRML170161:623,579–644,282undeterminedpheromone_receptor, fungal_mating_type_pheromone1fewer than 2 genes could be modelled
aLocusML170161:623,579–644,282undeterminedpra11fewer than 2 genes could be modelled
MATML170161:623,579–644,282undeterminedSTE30fewer than 2 genes could be modelled
BbetaML170161:623,579–644,282undeterminedbbr21fewer than 2 genes could be modelled
bLocusML170162:182,617–183,111undeterminedbW0fewer than 2 genes could be modelled
HDML170162:486,023–486,253undeterminedHD20fewer than 2 genes could be modelled
bLocusML170162:621,120–621,383undeterminedbW0fewer than 2 genes could be modelled
HDML170162:678,640–681,796undeterminedHD20fewer than 2 genes could be modelled
HDML170162:772,248–772,388undeterminedHD10fewer than 2 genes could be modelled
bLocusML170166:136,747–136,935undeterminedbW0fewer than 2 genes could be modelled
HDML170166:471,767–492,287undeterminedHD20fewer than 2 genes could be modelled
BalphaML170166:471,767–492,287undeterminedbar31fewer than 2 genes could be modelled
aLocusML170166:471,767–492,287undeterminedpra11fewer than 2 genes could be modelled
MATML170166:471,767–492,287undeterminedSTE31fewer than 2 genes could be modelled
BbetaML170166:471,767–492,287undeterminedbbr21fewer than 2 genes could be modelled
HDML170171:172,775–172,921undeterminedHD20fewer than 2 genes could be modelled
HDML170171:242,499–275,856undeterminedHD1, HD20fewer than 2 genes could be modelled
bLocusML170171:242,499–275,856undeterminedbE, bW1fewer than 2 genes could be modelled
AalphaML170171:242,499–275,856undeterminedZ0fewer than 2 genes could be modelled
BalphaML170180:260,034–261,614undeterminedbar31fewer than 2 genes could be modelled
bLocusML170181:69,991–70,110undeterminedbW0fewer than 2 genes could be modelled
HDML170181:231,763–231,948undeterminedHD20fewer than 2 genes could be modelled
BalphaML170181:324,665–325,428undeterminedbar31fewer than 2 genes could be modelled
bLocusML170181:380,883–381,404undeterminedbW0fewer than 2 genes could be modelled
BalphaML170188:69,221–70,796undeterminedbar31fewer than 2 genes could be modelled
aLocusML170188:69,221–70,796undeterminedpra11fewer than 2 genes could be modelled
MATML170188:69,221–70,796undeterminedSTE31fewer than 2 genes could be modelled
PRML170188:69,221–70,796undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170188:69,221–70,796undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170192:77,094–78,249undeterminedbar31fewer than 2 genes could be modelled
bLocusML170192:119,067–119,336undeterminedbW0fewer than 2 genes could be modelled
BalphaML170192:160,624–189,251undeterminedbar31fewer than 2 genes could be modelled
BalphaML170195:29,092–76,120undeterminedbar31fewer than 2 genes could be modelled
aLocusML170195:29,092–76,120undeterminedpra11fewer than 2 genes could be modelled
bLocusML170195:29,092–76,120undeterminedbW0fewer than 2 genes could be modelled
MATML170195:29,092–76,120undeterminedSTE31fewer than 2 genes could be modelled
BbetaML170195:29,092–76,120undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170203:193,192–226,992undeterminedbar31fewer than 2 genes could be modelled
HDML170209:74,993–97,393undeterminedHD21fewer than 2 genes could be modelled
PRML170209:74,993–97,393undeterminedpheromone_B43, fungal_mating_type_pheromone0fewer than 2 genes could be modelled
BalphaML170210:142,754–144,033undeterminedbar31fewer than 2 genes could be modelled
aLocusML170210:142,754–144,033undeterminedpra11fewer than 2 genes could be modelled
MATML170210:142,754–144,033undeterminedSTE31fewer than 2 genes could be modelled
PRML170210:142,754–144,033undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170210:142,754–144,033undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170215:32,916–34,370undeterminedbar31fewer than 2 genes could be modelled
BalphaML170224:109,864–117,010undeterminedbar31fewer than 2 genes could be modelled
aLocusML170224:109,864–117,010undeterminedpra11fewer than 2 genes could be modelled
MATML170224:109,864–117,010undeterminedSTE30fewer than 2 genes could be modelled
PRML170224:109,864–117,010undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170224:109,864–117,010undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170229:43,635–62,537undeterminedbar31fewer than 2 genes could be modelled
aLocusML170229:43,635–62,537undeterminedpra11fewer than 2 genes could be modelled
MATML170229:43,635–62,537undeterminedSTE31fewer than 2 genes could be modelled
PRML170229:43,635–62,537undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170229:43,635–62,537undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170233:3,758–16,050undeterminedbar31fewer than 2 genes could be modelled
aLocusML170233:3,758–16,050undeterminedpra11fewer than 2 genes could be modelled
MATML170233:3,758–16,050undeterminedSTE31fewer than 2 genes could be modelled
PRML170233:3,758–16,050undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170233:3,758–16,050undeterminedbbr21fewer than 2 genes could be modelled
bLocusML170233:47,287–47,475undeterminedbW0fewer than 2 genes could be modelled
bLocusML170245:19,160–19,546undeterminedbW0fewer than 2 genes could be modelled
BalphaML170245:61,085–62,439undeterminedbar31fewer than 2 genes could be modelled
BalphaML170256:36,441–43,057undeterminedbar31fewer than 2 genes could be modelled
BalphaML170279:4,395–22,159undeterminedbar31fewer than 2 genes could be modelled
BalphaML170280:8,623–15,212undeterminedbar31fewer than 2 genes could be modelled
aLocusML170280:8,623–15,212undeterminedpra11fewer than 2 genes could be modelled
MATML170280:8,623–15,212undeterminedSTE31fewer than 2 genes could be modelled
PRML170280:8,623–15,212undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170280:8,623–15,212undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170293:19,427–39,908undeterminedbar31fewer than 2 genes could be modelled
aLocusML170293:19,427–39,908undeterminedpra11fewer than 2 genes could be modelled
MATML170293:19,427–39,908undeterminedSTE31fewer than 2 genes could be modelled
PRML170293:19,427–39,908undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170293:19,427–39,908undeterminedbbr21fewer than 2 genes could be modelled
HDML170309:17,285–24,310undeterminedHD20fewer than 2 genes could be modelled
BalphaML170309:17,285–24,310undeterminedbar31fewer than 2 genes could be modelled
aLocusML170309:17,285–24,310undeterminedpra11fewer than 2 genes could be modelled
MATML170309:17,285–24,310undeterminedSTE30fewer than 2 genes could be modelled
PRML170309:17,285–24,310undeterminedpheromone_receptor1fewer than 2 genes could be modelled
BbetaML170309:17,285–24,310undeterminedbbr21fewer than 2 genes could be modelled
BalphaML170458:1,526–9,894undeterminedbar31fewer than 2 genes could be modelled
BalphaML170720:1,962–2,219undeterminedbar31fewer than 2 genes could be modelled
BalphaML170721:5–262undeterminedbar31fewer than 2 genes could be modelled
HDML170164:200,183–209,530undeterminedHD20fewer than 2 genes could be modelled
bLocusML170164:439,438–461,536undeterminedbW0fewer than 2 genes could be modelled
bLocusML170164:667,813–667,959undeterminedbW0fewer than 2 genes could be modelled
HDML170164:846,271–846,360undeterminedHD20fewer than 2 genes could be modelled
HDML170164:958,780–958,986undeterminedHD20fewer than 2 genes could be modelled
HDML170163:17,432–17,773undeterminedHD20fewer than 2 genes could be modelled
AalphaML170163:17,432–17,773undeterminedY0fewer than 2 genes could be modelled
bLocusML170163:17,432–17,773undeterminedbW0fewer than 2 genes could be modelled
bLocusML170170:318,169–318,291undeterminedbW0fewer than 2 genes could be modelled
AalphaML170170:433,234–433,332undeterminedZ0fewer than 2 genes could be modelled
AalphaML170165:57,642–57,968undeterminedZ0fewer than 2 genes could be modelled
HDML170165:849,864–871,083undeterminedHD20fewer than 2 genes could be modelled
AalphaML170220:22,265–22,396undeterminedZ0fewer than 2 genes could be modelled
HDML170220:92,956–93,183undeterminedHD20fewer than 2 genes could be modelled
AalphaML170361:697–936undeterminedY0fewer than 2 genes could be modelled
BalphaML170381:2,759–2,851undeterminedbap3-30fewer than 2 genes could be modelled
bLocusML170235:3,579–3,860undeterminedbW0fewer than 2 genes could be modelled
bLocusML170167:671,933–678,665undeterminedbW0fewer than 2 genes could be modelled
bLocusML170196:63,453–63,905undeterminedbW0fewer than 2 genes could be modelled
HDML170196:92,223–92,321undeterminedHD10fewer than 2 genes could be modelled
HDML170196:148,067–148,222undeterminedHD20fewer than 2 genes could be modelled
HDML170184:115,555–115,668undeterminedHD20fewer than 2 genes could be modelled
bLocusML170184:270,416–270,679undeterminedbW0fewer than 2 genes could be modelled
bLocusML170177:25,399–25,515undeterminedbW0fewer than 2 genes could be modelled
HDML170177:88,536–88,817undeterminedHD20fewer than 2 genes could be modelled
HDML170177:186,506–186,613undeterminedHD10fewer than 2 genes could be modelled
HDML170200:38,409–38,624undeterminedHD20fewer than 2 genes could be modelled
bLocusML170249:15,816–15,956undeterminedbW0fewer than 2 genes could be modelled
bLocusML170173:282,587–282,799undeterminedbW0fewer than 2 genes could be modelled
HDML170213:203,471–203,692undeterminedHD10fewer than 2 genes could be modelled
HDML170169:67,312–67,572undeterminedHD10fewer than 2 genes could be modelled
HDML170169:551,133–551,300undeterminedHD20fewer than 2 genes could be modelled
HDML170308:42,549–42,707undeterminedHD20fewer than 2 genes could be modelled
HDML170193:83,100–83,258undeterminedHD20fewer than 2 genes could be modelled
HDML170186:134,442–138,913undeterminedHD1, HD20fewer than 2 genes could be modelled
HDML170186:247,606–247,710undeterminedHD10fewer than 2 genes could be modelled
bLocusML170172:180,908–181,057undeterminedbW0fewer than 2 genes could be modelled
bLocusML170172:463,229–463,498undeterminedbW0fewer than 2 genes could be modelled
bLocusML170175:274,979–275,131undeterminedbW0fewer than 2 genes could be modelled
bLocusML170175:400,602–400,709undeterminedbW0fewer than 2 genes could be modelled
HDML170185:152,265–152,390undeterminedHD10fewer than 2 genes could be modelled
HDML170185:229,463–229,603undeterminedHD20fewer than 2 genes could be modelled
bLocusML170185:336,640–337,023undeterminedbW0fewer than 2 genes could be modelled
HDML170197:47,972–48,064undeterminedHD10fewer than 2 genes could be modelled
HDML170254:94,108–94,266undeterminedHD20fewer than 2 genes could be modelled
HDML170265:23,348–23,497undeterminedHD20fewer than 2 genes could be modelled
HDML170258:74,646–79,659undeterminedHD20fewer than 2 genes could be modelled
bLocusML170258:74,646–79,659undeterminedbW0fewer than 2 genes could be modelled
bLocusML170204:175,855–176,007undeterminedbW0fewer than 2 genes could be modelled
bLocusML170204:222,520–222,789undeterminedbW0fewer than 2 genes could be modelled
bLocusML170216:170,434–170,760undeterminedbW0fewer than 2 genes could be modelled
bLocusML170187:52,751–53,032undeterminedbW0fewer than 2 genes could be modelled
bLocusML170225:98,387–98,611undeterminedbW0fewer than 2 genes could be modelled
HDML170225:133,781–152,929undeterminedHD20fewer than 2 genes could be modelled
bLocusML170159:828,141–828,311undeterminedbW0fewer than 2 genes could be modelled
bLocusML170159:985,731–985,946undeterminedbW0fewer than 2 genes could be modelled
bLocusML170159:1,060,133–1,060,381undeterminedbW0fewer than 2 genes could be modelled
HDML170231:69,400–69,582undeterminedHD10fewer than 2 genes could be modelled
HDML170244:92,709–92,864undeterminedHD20fewer than 2 genes could be modelled
HDML170673:374–766undeterminedHD20fewer than 2 genes could be modelled
HDML170512:6,258–6,419undeterminedHD20fewer than 2 genes could be modelled
bLocusML170214:17,635–46,403undeterminedbW0fewer than 2 genes could be modelled
bLocusML170189:285,280–285,501undeterminedbW0fewer than 2 genes could be modelled
bLocusML170218:31,676–31,855undeterminedbW0fewer than 2 genes could be modelled
bLocusML170218:107,317–107,493undeterminedbW0fewer than 2 genes could be modelled
bLocusML170218:144,467–144,610undeterminedbW0fewer than 2 genes could be modelled
bLocusML170325:14,722–14,895undeterminedbW0fewer than 2 genes could be modelled
bLocusML170333:20,911–21,090undeterminedbW0fewer than 2 genes could be modelled
bLocusML170578:4,572–4,697undeterminedbW0fewer than 2 genes could be modelled
bLocusML170232:126,861–126,989undeterminedbW0fewer than 2 genes could be modelled
bLocusML170230:76,550–76,708undeterminedbW0fewer than 2 genes could be modelled
bLocusML170201:155,946–156,056undeterminedbW0fewer than 2 genes could be modelled
MATML170156:449,716–450,028undeterminedRPL391too few of the family's genes found
MATML170161:978,074–979,293undeterminedPAN61too few of the family's genes found
MATML170162:312,810–313,136undeterminedRPL391too few of the family's genes found
PRML170180:260,034–261,614undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170180:260,034–261,614undeterminedbbr21too few of the family's genes found
PRML170181:324,665–325,428undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170181:324,665–325,428undeterminedbbr21too few of the family's genes found
MATML170192:77,094–78,249undeterminedSTE31too few of the family's genes found
PRML170192:77,094–78,249undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170192:77,094–78,249undeterminedbbr21too few of the family's genes found
MATML170192:160,624–189,251undeterminedSTE31too few of the family's genes found
PRML170192:160,624–189,251undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170192:160,624–189,251undeterminedbbr21too few of the family's genes found
MATML170203:193,192–226,992undeterminedSTE31too few of the family's genes found
PRML170203:193,192–226,992undeterminedpheromone_receptor, caax_precursor2too few of the family's genes found
BbetaML170203:193,192–226,992undeterminedbbr21too few of the family's genes found
MATML170215:32,916–34,370undeterminedSTE31too few of the family's genes found
PRML170215:32,916–34,370undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170215:32,916–34,370undeterminedbbr21too few of the family's genes found
MATML170245:61,085–62,439undeterminedSTE31too few of the family's genes found
PRML170245:61,085–62,439undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170245:61,085–62,439undeterminedbbr21too few of the family's genes found
MATML170256:36,441–43,057undeterminedSTE31too few of the family's genes found
PRML170256:36,441–43,057undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170256:36,441–43,057undeterminedbbr21too few of the family's genes found
MATML170279:4,395–22,159undeterminedSTE31too few of the family's genes found
PRML170279:4,395–22,159undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170279:4,395–22,159undeterminedbbr21too few of the family's genes found
PRML170458:1,526–9,894undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170458:1,526–9,894undeterminedbbr21too few of the family's genes found
MATML170720:1,962–2,219undeterminedSTE31too few of the family's genes found
PRML170720:1,962–2,219undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170720:1,962–2,219undeterminedbbr21too few of the family's genes found
MATML170721:5–262undeterminedSTE31too few of the family's genes found
PRML170721:5–262undeterminedpheromone_receptor1too few of the family's genes found
BbetaML170721:5–262undeterminedbbr21too few of the family's genes found

Provenance

Genome file
RmelleaRicmel1.genome.fasta
Assembly
848 contigs · 45.1 Mb · N50 362.0 kb
Genome SHA-256
67978120905129767cb796869a4626b2491b8ca4b5d6145e713037fa8335e937
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'species', 'routing_taxid': 1124673, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1124673', 'routed_by': 'family taxid 1124673 (phylum_fallback)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:51:03Z
Run time
109 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits