RlauricolaRL4 Raffaelea lauricola RL4

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, JACBXF010000158:104782-134183

MATPredictFungiDBAPN2 (flanking_conserved) JACBXF010000158:104782-107359 + identity 60.9APN2COX13 (flanking_conserved) JACBXF010000158:111228-111840 + identity 74.5COX13MAT1-2-1 (core_MAT) JACBXF010000158:122384-123426 - identity 57.1MAT1-2-1MAT1-1-1 (core_MAT) JACBXF010000158:125933-126713 + identity 33.0MAT1-1-1SLA2 (flanking_conserved) JACBXF010000158:130793-134183 - identity 89.5SLA2RL4_JR_09415 98806-99902 -: unspecified productRL4_JR_09415RL4_JR_09416 100244-101915 +: WD domain, G-beta repeat | domain-containing proteinRL4_JR_09416RL4_JR_09417 103175-104257 -: unspecified productRL4_JR_09417RL4_JR_09418 104782-107359 +: DNA-(apurinic or apyrimidinic site) endonuclease 2RL4_JR_09418RL4_JR_09419 107696-109551 -: PA domain | Ring finger domain | domain-containing proteinRL4_JR_09419RL4_JR_09420 111228-111840 +: Cytochrome c oxidase subunit VIa | domain-containing proteinRL4_JR_09420RL4_JR_09421 113048-113236 +: unspecified productRL4_JR_09421RL4_JR_09422 122384-123426 -: HMG (high mobility group) box | domain-containing proteinRL4_JR_09422RL4_JR_09423 125933-126713 +: unspecified productRL4_JR_09423RL4_JR_09424 127067-127753 +: unspecified productRL4_JR_09424RL4_JR_09425 128366-129232 +: unspecified productRL4_JR_09425RL4_JR_09426 130793-134183 -: ANTH domain | I/LWEQ domain | domain-containing proteinRL4_JR_09426RL4_JR_09427 134684-139354 +: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymeraseRL4_JR_09427100 kb104 kb108 kb112 kb116 kb120 kb124 kb128 kb132 kb136 kbJACBXF010000158
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved104782-107359 +annotatedRL4_JR_09418DNA-(apurinic or apyrimidinic site) endonuclease 2RL4_JR_09418 covers 100% of it on the same strand
COX13flanking_conserved111228-111840 +annotatedRL4_JR_09420Cytochrome c oxidase subunit VIa | domain-containing proteinRL4_JR_09420 covers 100% of it on the same strand
MAT1-2-1core_MAT122384-123426 -annotatedRL4_JR_09422HMG (high mobility group) box | domain-containing proteinRL4_JR_09422 covers 100% of it on the same strand
MAT1-1-1core_MAT125933-126713 +annotatedRL4_JR_09423unspecified productRL4_JR_09423 covers 100% of it on the same strand
SLA2flanking_conserved130793-134183 -annotatedRL4_JR_09426ANTH domain | I/LWEQ domain | domain-containing proteinRL4_JR_09426 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
RL4_JR_09419107696-109551 -PA domain | Ring finger domain | domain-containing protein
RL4_JR_09421113048-113236 +unspecified product
RL4_JR_09424127067-127753 +unspecified product
RL4_JR_09425128366-129232 +unspecified product