RdelemarRA99-880 Rhizopus delemar RA 99-880

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Mucoromycota_MAT_0: Plus Mucoromycota:MAT, confidence high, CH476732:3251438-3316651

MATPredictFungiDBbtbA (flanking_variable) CH476732:3305306-3307136 + identity 90.7btbAsexP (core_MAT) CH476732:3309519-3310457 + identity 93.29sexPrnhA (flanking_conserved) CH476732:3310529-3314719 + identity 88.2rnhAglrA (flanking_variable) CH476732:3315053-3316651 - identity 84.0glrARO3G_01269 3245396-3247815 -: hypothetical proteinRO3G_01269RO3G_01270 3248287-3248877 +: hypothetical proteinRO3G_01270RO3G_01271 3249612-3250947 -: LIM domain | domain-containing proteinRO3G_01271RO3G_01272 3251438-3257236 -: Helicase SEN1 beta-barrel domain | AAA domain | AAA domain | SEN1 N terminal | domain-containing proteinRO3G_01272RO3G_01273 3258582-3258781 -: hypothetical proteinRO3G_01273RO3G_01274 3261122-3262273 +: hypothetical proteinRO3G_01274RO3G_01275 3263700-3265066 +: ATP-dependent Clp protease, ATP-binding subunit ClpXRO3G_01275RO3G_01276 3265412-3267793 +: SWIB/MDM2 domain | domain-containing proteinRO3G_01276RO3G_01277 3268617-3268988 +: hypothetical proteinRO3G_01277RO3G_01278 3269672-3270230 -: rhizopuspepsinRO3G_01278RO3G_01279 3270544-3270996 -: hypothetical proteinRO3G_01279RO3G_01280 3272485-3273433 +: prohibitin-1RO3G_01280RO3G_19014 3278209-3278280 -: tRNA-GluRO3G_19014RO3G_01281 3282636-3282902 +: hypothetical proteinRO3G_01281RO3G_01282 3283909-3285014 +: RhizopuspepsinRO3G_01282RO3G_01283 3288551-3289649 -: Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing proteinRO3G_01283RO3G_01284 3291838-3292579 +: 3,4-dihydroxy-2-butanone 4-phosphate synthaseRO3G_01284RO3G_01285 3292826-3294515 +: ATP synthase subunit betaRO3G_01285RO3G_01286 3294641-3295459 +: hypothetical proteinRO3G_01286RO3G_01287 3295901-3296140 -: hypothetical proteinRO3G_01287RO3G_01288 3303487-3304968 +: Regulator of chromosome condensation (RCC1) repeat | Ankyrin repeats (3 copies) | domain-containing proteinRO3G_01288RO3G_01289 3305306-3307136 +: BTB/POZ domain | domain-containing proteinRO3G_01289RO3G_01290 3307465-3308089 +: hypothetical proteinRO3G_01290RO3G_01291 3310529-3314719 +: AAA domain | AAA domain | ZNFX1 domain | domain-containing proteinRO3G_01291RO3G_01292 3315053-3316651 -: glutathione-disulfide reductaseRO3G_01292RO3G_01293 3317309-3317599 +: hypothetical proteinRO3G_01293RO3G_01294 3318741-3320828 -: Reverse transcriptase (RNA-dependent DNA polymerase) | domain-containing proteinRO3G_012943248 kb3256 kb3264 kb3272 kb3280 kb3288 kb3296 kb3304 kb3312 kb3320 kbCH476732
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
btbAflanking_variable3305306-3307136 +annotatedRO3G_01289BTB/POZ domain | domain-containing proteinRO3G_01289 covers 100% of it on the same strand
sexPcore_MAT3309519-3310457 +novel—no FungiDB gene overlaps this MATPredict gene
rnhAflanking_conserved3310529-3314719 +annotatedRO3G_01291AAA domain | AAA domain | ZNFX1 domain | domain-containing proteinRO3G_01291 covers 100% of it on the same strand
glrAflanking_variable3315053-3316651 -annotatedRO3G_01292glutathione-disulfide reductaseRO3G_01292 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
RO3G_012723251438-3257236 -Helicase SEN1 beta-barrel domain | AAA domain | AAA domain | SEN1 N terminal | domain-containing protein
RO3G_012733258582-3258781 -hypothetical protein
RO3G_012743261122-3262273 +hypothetical protein
RO3G_012753263700-3265066 +ATP-dependent Clp protease, ATP-binding subunit ClpX
RO3G_012763265412-3267793 +SWIB/MDM2 domain | domain-containing protein
RO3G_012773268617-3268988 +hypothetical protein
RO3G_012783269672-3270230 -rhizopuspepsin
RO3G_012793270544-3270996 -hypothetical protein
RO3G_012803272485-3273433 +prohibitin-1
RO3G_190143278209-3278280 -tRNA-Glu
RO3G_012813282636-3282902 +hypothetical protein
RO3G_012823283909-3285014 +Rhizopuspepsin
RO3G_012833288551-3289649 -Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing protein
RO3G_012843291838-3292579 +3,4-dihydroxy-2-butanone 4-phosphate synthase
RO3G_012853292826-3294515 +ATP synthase subunit beta
RO3G_012863294641-3295459 +hypothetical protein
RO3G_012873295901-3296140 -hypothetical protein
RO3G_012883303487-3304968 +Regulator of chromosome condensation (RCC1) repeat | Ankyrin repeats (3 copies) | domain-containing protein
RO3G_012903307465-3308089 +hypothetical protein