MATPredict · mating-type report

PsorghiRO10H11247

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:41 UTC by MATPredict 0.8.1

Result

Mating type

undeterminedhigh confidence

Called loci 1

undetermined rustHD family · Basidiomycota

high confidence
Gene order of the undetermined locus on LAVV01008280undetermined locus: genes from left to right on LAVV01008280, 97,053 to 105,122: bE (core MAT gene, minus strand); bW (core MAT gene, plus strand).98 kb100 kb102 kb104 kb36.3 kb more to contig end →called locusbE: core MAT gene, 97,053–98,577 (-), identity 51.3%, search hit onlybEbW: core MAT gene, 103,375–105,122 (+), identity 54.8%, search hit onlybW
Gene order on LAVV01008280. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on LAVV01008280, 96,650 to 105,525VP01_32g35 97,053-98,577 (-): Homeodomain | domain-containing proteinVP01_32g35VP01_32g24 101,763-102,826 (-): unspecified productVP01_32g24VP01_32g11 102,342-103,816 (+): uncharacterized proteinVP01_32g11VP01_32g25 103,375-105,122 (+): Homeobox KN domain | domain-containing proteinVP01_32g25
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
  • Idiomorph undetermined: the evidence for two idiomorphs is tied or too close to call.
Location
LAVV01008280:97,053–105,122 · 8.1 kb
Own genes
LAVV01008280:97,053–105,122 · 8.1 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
36.7 kb
Region (samtools)
LAVV01008280:97053-105122

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
bEcore MAThit onlyDIAMOND, proteome51.3cov 78.6%2.1e-84254 bits97,053–98,577 -–1165861_pst-78_rustHD_b1VP01_32g35
bWcore MAThit onlyDIAMOND, proteome54.8cov 45.6%8.2e-95293 bits103,375–105,122 +–630390_1-1-bbbd-race-1_rustHD_b2VP01_32g11
VP01_32g25

Provenance

Genome file
PsorghiRO10H11247.genome.fasta
Assembly
15,715 contigs · 99.5 Mb · N50 19.1 kb
Genome SHA-256
0d2475b52ccc8f06ea7837422ba82759157ced905b48a6698b0ef5da1ca64918
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'species', 'routing_taxid': 5262, 'routing_taxid_rank': 'family', 'flags': ['high_N'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 5262', 'routed_by': 'family taxid 5262 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:41:29Z
Run time
12 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits