PrubensWisconsin54-1255 Penicillium rubens Wisconsin 54-1255

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, Pc00c20:1753589-1771151

MATPredictFungiDBMAT1-1-4 (core_MAT) Pc00c20:1753589-1753711 - identity 39.024MAT1-1-4COX13 (flanking_conserved) Pc00c20:1760299-1761100 - identity 78.9COX13APN2 (flanking_conserved) Pc00c20:1761420-1763660 + identity 84.1APN2MAT1-1-1 (core_MAT) Pc00c20:1765021-1766097 + identity 41.0MAT1-1-1SLA2 (flanking_conserved) Pc00c20:1767286-1771151 - identity 90.8SLA2PCH_Pc20g07730 1747858-1748736 -: Vma22/CCDC115 | domain-containing proteinPCH_Pc20g07730PCH_Pc20g07740 1749334-1750050 +: Complex 1 protein (LYR family) | domain-containing proteinPCH_Pc20g07740PCH_Pc20g07750 1750508-1752681 +: unspecified productPCH_Pc20g07750PCH_Pc20g07760 1753088-1756531 -: Poly(ADP-ribose) polymerase catalytic domain | Ubiquitin-conjugating enzyme | domain-containing proteinPCH_Pc20g07760PCH_Pc20g07770 1757813-1759576 +: unspecified productPCH_Pc20g07770PCH_Pc20g07780 1760299-1761100 -: Cytochrome c oxidase subunit VIa | domain-containing proteinPCH_Pc20g07780PCH_Pc20g07790 1761420-1763660 +: DNA-(apurinic or apyrimidinic site) endonuclease 2PCH_Pc20g07790PCH_Pc20g07800 1765021-1766097 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinPCH_Pc20g07800PCH_Pc20g07810 1767286-1771151 -: ANTH domain | I/LWEQ domain | domain-containing proteinPCH_Pc20g07810PCH_Pc20g07820 1771847-1774700 -: Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing proteinPCH_Pc20g07820PCH_Pc20g07830 1775654-1777055 -: Polyprenyl synthetase | domain-containing proteinPCH_Pc20g078301752 kb1756 kb1760 kb1764 kb1768 kb1772 kb1776 kbPc00c20
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-4core_MAT1753589-1753711 -annotatedPCH_Pc20g07760Poly(ADP-ribose) polymerase catalytic domain | Ubiquitin-conjugating enzyme | domain-containing proteinPCH_Pc20g07760 covers 100% of it on the same strand
COX13flanking_conserved1760299-1761100 -annotatedPCH_Pc20g07780Cytochrome c oxidase subunit VIa | domain-containing proteinPCH_Pc20g07780 covers 100% of it on the same strand
APN2flanking_conserved1761420-1763660 +annotatedPCH_Pc20g07790DNA-(apurinic or apyrimidinic site) endonuclease 2PCH_Pc20g07790 covers 100% of it on the same strand
MAT1-1-1core_MAT1765021-1766097 +annotatedPCH_Pc20g07800Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinPCH_Pc20g07800 covers 100% of it on the same strand
SLA2flanking_conserved1767286-1771151 -annotatedPCH_Pc20g07810ANTH domain | I/LWEQ domain | domain-containing proteinPCH_Pc20g07810 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PCH_Pc20g077701757813-1759576 +unspecified product