PostreatusPC15

What was searched

Routing

By taxonomy. The genome's taxonomy falls inside a curated family's scope; only those families were searched.

Families searched

Basidiomycota:HD, Basidiomycota:PR, Basidiomycota:Aalpha, Basidiomycota:Abeta, Basidiomycota:Balpha, Basidiomycota:Bbeta

Genetic code

1

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Families searched but not called

Pheromone-receptor arrays

Receptor arrays occur for both mating and non-mating STE3-like receptors (the study found arrays holding paralogs beside the mating receptors in Coprinopsis cinerea and Schizophyllum commune), so array membership does not establish that a locus is a mating receptor. receptor_array_support is a flag on the evidence behind an array; it never changes a call, its confidence or its verification label. receptor_cassette_* fields describe pheromone-precursor cassette structure (2 or more strict-CAAX ORFs within 5 kb of a receptor locus; class C when that many of those ORFs also carry tblastn precursor homology). They are descriptive only: the CAAX scan is also what admits a PR call, so cassettes are circular as confirmation; own-species curated precursors are a self-hit for class C; tandem receptors may be merged into one locus. They never change a call, tier, label, confidence or count.

Withheld candidate loci 39

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (35); too few of the family's genes found (4).

Provenance

Genome file

PostreatusPC15.genome.fasta

Assembly

12 contigs · 34.3 Mb · N50 3.3 Mb

Genome SHA-256

c425a1017b2da545712a08ce7ad03e12d3cb1a5721e06bb3193ea664a759982d

MATPredict

0.8.1 (v0.8.1, 3a62e6302b)

Database

86f18d232e4fe95d · 185 records

Taxonomy

local NCBI taxonomy snapshot 2026-10-01

Parameters

phylum=Basidiomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Basidiomycota', 'phylum_taxid': 5204, 'deepest_rank': 'species', 'routing_taxid': 104366, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Basidiomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 104366', 'routed_by': 'family taxid 104366 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0

Run started

2026-11-07T02:34:34Z

Run time

100 s

Files

detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.