PnodorumSN15 Parastagonospora nodorum SN15

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CP069023:1879443-1902705

MATPredictFungiDBMAT1-1-1 (core_MAT) CP069023:1879443-1880532 + identity 100.0MAT1-1-1APN2 (flanking_conserved) CP069023:1883819-1885776 - identity 88.6APN2COX13 (flanking_conserved) CP069023:1886092-1886702 + identity 51.6COX13MAT1-1-4 (core_MAT) CP069023:1902598-1902705 - identity 39.474MAT1-1-4JI435_003730 1875201-1877443 -: RhoGAP domain | Fes/CIP4, and EFC/F-BAR homology domain | domain-containing proteinJI435_003730JI435_003740 1877758-1878708 +: Pyridoxamine 5'-phosphate oxidase | domain-containing proteinJI435_003740JI435_003750 1879443-1880532 +: mating-type protein MAT-1JI435_003750JI435_400630 1883316-1883569 +: unspecified productJI435_400630JI435_003770 1883819-1885776 -: DNA-(apurinic or apyrimidinic site) endonuclease 2JI435_003770JI435_003780 1886092-1886702 +: cytochrome c oxidase subunitJI435_003780JI435_003790 1886895-1889351 -: Anaphase-promoting complex subunit 5 | domain-containing proteinJI435_003790JI435_003810 1889681-1890554 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinJI435_003810JI435_003820 1890856-1892107 +: Mitochondrial carrier protein | domain-containing proteinJI435_003820JI435_003840 1892644-1893806 +: unspecified productJI435_003840JI435_003850 1894200-1894743 -: translation machinery-associated protein 22JI435_003850JI435_003870 1895349-1896114 -: PAT complex subunit Asterix | domain-containing proteinJI435_003870JI435_003880 1896660-1901743 +: mediator of RNA polymerase II transcription subunit 12JI435_003880JI435_003890 1902142-1903308 -: unspecified productJI435_003890JI435_300220 1903587-1905189 -: Autophagy-related protein 29JI435_300220JI435_003900 1905461-1906471 +: phosphoribosylaminoimidazole-succinocarboxamide synthaseJI435_003900JI435_003910 1906566-1908242 -: precorrin-2 dehydrogenaseJI435_0039101876 kb1880 kb1884 kb1888 kb1892 kb1896 kb1900 kb1904 kbCP069023
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT1879443-1880532 +annotatedJI435_003750mating-type protein MAT-1JI435_003750 covers 100% of it on the same strand
APN2flanking_conserved1883819-1885776 -annotatedJI435_003770DNA-(apurinic or apyrimidinic site) endonuclease 2JI435_003770 covers 100% of it on the same strand
COX13flanking_conserved1886092-1886702 +annotatedJI435_003780cytochrome c oxidase subunitJI435_003780 covers 100% of it on the same strand
MAT1-1-4core_MAT1902598-1902705 -annotatedJI435_003890unspecified productJI435_003890 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
JI435_4006301883316-1883569 +unspecified product
JI435_0037901886895-1889351 -Anaphase-promoting complex subunit 5 | domain-containing protein
JI435_0038101889681-1890554 -Complex I intermediate-associated protein 30 (CIA30) | domain-containing protein
JI435_0038201890856-1892107 +Mitochondrial carrier protein | domain-containing protein
JI435_0038401892644-1893806 +unspecified product
JI435_0038501894200-1894743 -translation machinery-associated protein 22
JI435_0038701895349-1896114 -PAT complex subunit Asterix | domain-containing protein
JI435_0038801896660-1901743 +mediator of RNA polymerase II transcription subunit 12