PmurinaB123 Pneumocystis murina B123

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: P Ascomycota:PM, confidence medium, AFWA02000013:71308-80799

MATPredictFungiDBmatPi (core_MAT) AFWA02000013:71308-72000 - identity 90.0matPimatMc (core_MAT) AFWA02000013:80110-80799 - identity 85.8matMcPNEG_02271 66260-70122 -: unspecified productPNEG_02271PNEG_02272 70205-70743 +: Prefoldin subunit | domain-containing proteinPNEG_02272PNEG_02273 71308-72000 -: Homeobox KN domain | domain-containing proteinPNEG_02273PNEG_02274 72135-75851 +: ATP-dependent chaperone ClpBPNEG_02274PNEG_04001 75852-79754 +: ANTH domain | I/LWEQ domain | domain-containing proteinPNEG_04001PNEG_02275 80110-80799 -: HMG (high mobility group) box | domain-containing proteinPNEG_02275PNEG_02276 81777-82578 +: Homeodomain | domain-containing proteinPNEG_02276PNEG_02277 83290-84486 +: HMG (high mobility group) box | domain-containing proteinPNEG_02277PNEG_02278 84964-89540 +: Anaphase-promoting complex subunit 5 | domain-containing proteinPNEG_0227868 kb70 kb72 kb74 kb76 kb78 kb80 kb82 kb84 kbAFWA02000013
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matPicore_MAT71308-72000 -annotatedPNEG_02273Homeobox KN domain | domain-containing proteinPNEG_02273 covers 100% of it on the same strand
matMccore_MAT80110-80799 -annotatedPNEG_02275HMG (high mobility group) box | domain-containing proteinPNEG_02275 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PNEG_0227472135-75851 +ATP-dependent chaperone ClpB
PNEG_0400175852-79754 +ANTH domain | I/LWEQ domain | domain-containing protein