MATPredict · mating-type report

PlutziiPb01

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:53 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KN294007MAT1-1 locus: genes from left to right on KN294007, 169,849 to 188,339: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, minus strand); MAT1-1-4 (core MAT gene, minus strand); COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand).170 kb175 kb180 kb185 kb← 168.9 kb more to contig endcalled locusSLA2: conserved flank, 169,849–173,388 (+), identity 87.9%, search hit onlySLA2MAT1-1-1: core MAT gene, 178,353–179,713 (-), identity 58.2%, search hit onlyMAT1-1-1MAT1-1-4: core MAT gene, 181,116–181,804 (-), identity 35.7%, search hit onlyMAT1-1-4COX13: conserved flank, 184,972–185,680 (-), identity 78.8%, search hit onlyCOX13APN2: conserved flank, 186,156–188,339 (+), identity 77.1%, search hit onlyAPN2
Gene order on KN294007. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on KN294007, 168,925 to 189,264PAAG_12114 168,869-169,517 (-): hypothetical proteinPAAG_12114PAAG_05871 169,849-173,388 (+): cytoskeleton assembly control protein Sla2PAAG_05871PAAG_05873 178,353-179,713 (-): mating locus 1-1PAAG_05873PAAG_05874 181,116-181,804 (-): hypothetical proteinPAAG_05874PAAG_05875 183,114-184,128 (-): PAT complex subunit Asterix | domain-containing proteinPAAG_05875PAAG_05876 184,972-185,680 (-): Cytochrome c oxidase subunit VIa | domain-containing proteinPAAG_05876PAAG_05877 186,156-188,339 (+): DNA-(apurinic or apyrimidinic site) lyasePAAG_05877
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KN294007:169,849–188,339 · 18.5 kb
Own genes
KN294007:169,849–188,339 · 18.5 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
169.8 kb
Region (samtools)
KN294007:169849-188339
Idiomorph scores
  • MAT1-1 271.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome87.9cov 81.6%< 1e-1801,462 bits169,849–173,388 +–1301501_voucher-215_MAT_MAT1-1PAAG_05871
MAT1-1-1core MAThit onlyDIAMOND, proteome58.2cov 41.8%4.7e-90271 bits178,353–179,713 -–162425_fgsc-a4_MAT_combinedPAAG_05873
MAT1-1-4core MAThit onlyDIAMOND, proteome35.7cov 72.0%4.2e-34115 bits181,116–181,804 -–199306_rmscc1040_MAT_MAT1-1PAAG_05874
COX13conserved flankhit onlyDIAMOND, proteome78.8cov 73.3%7.5e-47141 bits184,972–185,680 -–5501_rs_MAT_MAT1-2PAAG_05876
APN2conserved flankhit onlyDIAMOND, proteome77.1cov 29.2%1.1e-237665 bits186,156–188,339 +–2903220_liq80xsp_MAT_combinedPAAG_05877

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATKN293997:142,727–145,114MAT1-2MAT1-2-11too few of the family's genes found
MATKN293999:431,087–432,669MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
PlutziiPb01.genome.fasta
Assembly
110 contigs · 32.9 Mb · N50 1.0 Mb
Genome SHA-256
960b789f761fbabb853e9d1e9f0a12fd408537519f4e881f1d6f3ac8021806fd
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 299071, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 299071', 'routed_by': 'family taxid 299071 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:52:32Z
Run time
58 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits