PlingamJN3 Plenodomus lingam JN3
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, FP929126:554610-582082
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| MAT1-2-1 | core_MAT | 554610-555882 + | annotated | LEMA_P114390.1 | HMG (high mobility group) box | domain-containing protein | LEMA_P114390.1 covers 100% of it on the same strand |
| APN2 | flanking_conserved | 558980-560932 - | annotated | LEMA_P114420.1 | similar to DNA lyase | LEMA_P114420.1 covers 100% of it on the same strand |
| COX13 | flanking_conserved | 561318-561980 + | annotated | LEMA_P114430.1 | similar to cytochrome c oxidase subunit VIa | LEMA_P114430.1 covers 100% of it on the same strand |
| MAT1-1-4 | core_MAT | 581957-582082 + | annotated | LEMA_P114520.1 | Autophagy-related protein 29 | LEMA_P114520.1 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| LEMA_P114400.1 | 557805-558191 + | unspecified product |
| LEMA_P114410.1 | 558371-558532 + | unspecified product |
| LEMA_P114440.1 | 562197-565010 - | similar to anaphase-promoting complex subunit Apc5 |
| LEMA_P114450.1 | 565196-566077 - | similar to complex I intermediate-associated protein CIA30 |
| LEMA_P114460.1 | 566430-567681 + | similar to mitochondrial carrier protein rim2 |
| LEMA_P114470.1 | 568199-569525 + | unspecified product |
| LEMA_P114480.1 | 569966-570484 - | Translation initiation factor SUI1 | domain-containing protein |
| LEMA_P114490.1 | 570897-571831 - | PAT complex subunit Asterix | domain-containing protein |
| LEMA_P114500.1 | 572596-577678 + | Transcription mediator complex subunit Med12 | SRB8 ARM-like domain | domain-containing protein |
| LEMA_P114510.1 | 578156-579147 - | similar to phosphoribosylaminoimidazole-succinocarboxamide synthase |