PlingamCAN1 Plenodomus lingam CAN1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, NW_027093945:485602-513168

MATPredictFungiDBMAT1-1-1 (core_MAT) NW_027093945:485602-486969 + identity 99.8MAT1-1-1APN2 (flanking_conserved) NW_027093945:490051-492003 - identity 84.1APN2COX13 (flanking_conserved) NW_027093945:492389-493051 + identity 48.6COX13MAT1-1-4 (core_MAT) NW_027093945:513043-513168 + identity 40.426MAT1-1-4IAQ61_008461 479685-480821 -: NIPSNAP | domain-containing proteinIAQ61_008461IAQ61_008462 481503-483726 -: RhoGAP domain | Fes/CIP4, and EFC/F-BAR homology domain | domain-containing proteinIAQ61_008462IAQ61_008463 483892-485505 +: Pyridoxamine 5'-phosphate oxidase | domain-containing proteinIAQ61_008463IAQ61_008464 485506-487553 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinIAQ61_008464IAQ61_008465 490051-492003 -: DNA-(apurinic or apyrimidinic site) endonuclease 2IAQ61_008465IAQ61_008466 492389-493051 +: Cytochrome c oxidase subunit VIa | domain-containing proteinIAQ61_008466IAQ61_008467 493268-495618 -: Anaphase-promoting complex subunit 5 | domain-containing proteinIAQ61_008467IAQ61_008468 496267-497148 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinIAQ61_008468IAQ61_008469 497322-499190 +: Mitochondrial carrier protein | domain-containing proteinIAQ61_008469IAQ61_008470 499267-500593 +: uncharacterized proteinIAQ61_008470IAQ61_008471 SUI1 500945-501906 -: Eukaryotic translation initiation factor eIF-1IAQ61_008471 SUI1IAQ61_008472 502065-502916 -: PAT complex subunit Asterix | domain-containing proteinIAQ61_008472IAQ61_008473 503682-508764 +: Transcription mediator complex subunit Med12 | SRB8 ARM-like domain | domain-containing proteinIAQ61_008473IAQ61_008474 509212-510273 -: phosphoribosylaminoimidazolesuccinocarboxamide synthaseIAQ61_008474IAQ61_008475 510440-512394 +: Autophagy-related protein 29IAQ61_008475IAQ61_008476 512452-513861 +: uncharacterized proteinIAQ61_008476IAQ61_008477 513929-515303 -: SUR7/PalI family | domain-containing proteinIAQ61_008477IAQ61_008478 515430-515807 -: uncharacterized proteinIAQ61_008478IAQ61_008479 515893-517177 +: Rogdi leucine zipper containing protein | domain-containing proteinIAQ61_008479IAQ61_008480 517343-519019 +: precorrin-2 dehydrogenaseIAQ61_008480484 kb488 kb492 kb496 kb500 kb504 kb508 kb512 kb516 kbNW_027093945
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT485602-486969 +annotatedIAQ61_008464Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinIAQ61_008464 covers 100% of it on the same strand
APN2flanking_conserved490051-492003 -annotatedIAQ61_008465DNA-(apurinic or apyrimidinic site) endonuclease 2IAQ61_008465 covers 100% of it on the same strand
COX13flanking_conserved492389-493051 +annotatedIAQ61_008466Cytochrome c oxidase subunit VIa | domain-containing proteinIAQ61_008466 covers 100% of it on the same strand
MAT1-1-4core_MAT513043-513168 +annotatedIAQ61_008476uncharacterized proteinIAQ61_008476 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
IAQ61_008467493268-495618 -Anaphase-promoting complex subunit 5 | domain-containing protein
IAQ61_008468496267-497148 -Complex I intermediate-associated protein 30 (CIA30) | domain-containing protein
IAQ61_008469497322-499190 +Mitochondrial carrier protein | domain-containing protein
IAQ61_008470499267-500593 +uncharacterized protein
IAQ61_008471 SUI1500945-501906 -Eukaryotic translation initiation factor eIF-1
IAQ61_008472502065-502916 -PAT complex subunit Asterix | domain-containing protein
IAQ61_008473503682-508764 +Transcription mediator complex subunit Med12 | SRB8 ARM-like domain | domain-containing protein
IAQ61_008474509212-510273 -phosphoribosylaminoimidazolesuccinocarboxamide synthase
IAQ61_008475510440-512394 +Autophagy-related protein 29