PkudriavzeviiCBS573 Pichia kudriavzevii strain CBS573

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATa Ascomycota:MATsc, confidence medium, CP028774:307183-311300

MATPredictFungiDBsla2 (flanking_conserved) CP028774:307183-310401 + identity 35.1sla2MATA1 (core_MAT) CP028774:310491-311300 - identity 57.5MATA1C5L36_0B01520 301269-303107 +: DEAD/DEAH box helicase | ATP-dependent rRNA helicase SPB4-like, C-terminal tail | Helicase conserved C-terminal domain | ATP-dependent rRNA helicase SPB4-like, C-terminal extension | domain-containing proteinC5L36_0B01520C5L36_0B01530 303182-304339 -: Pyridoxal-phosphate dependent enzyme | domain-containing proteinC5L36_0B01530C5L36_0B01540 304514-305161 +: unspecified productC5L36_0B01540C5L36_0B01550 305186-305929 -: Pre-mRNA splicing factor | N-terminal domain of CBF1 interacting co-repressor CIR | domain-containing proteinC5L36_0B01550C5L36_0B01560 306404-306947 -: Translation initiation factor SUI1 | domain-containing proteinC5L36_0B01560C5L36_0B01570 307183-310401 +: ANTH domain | I/LWEQ domain | domain-containing proteinC5L36_0B01570C5L36_0B01580 310491-311300 -: Homeodomain | domain-containing proteinC5L36_0B01580C5L36_0B01585 311575-312245 +: unspecified productC5L36_0B01585C5L36_0B01590 312347-313684 -: alpha/beta hydrolase fold | domain-containing proteinC5L36_0B01590C5L36_0B01600 313903-317976 -: Exocyst complex component Sec3, coiled-coil | Exocyst complex component SEC3 N-terminal PIP2 binding PH | Exocyst complex component Sec3, C-terminal | domain-containing proteinC5L36_0B01600304 kb306 kb308 kb310 kb312 kb314 kb316 kbCP028774
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
sla2flanking_conserved307183-310401 +annotatedC5L36_0B01570ANTH domain | I/LWEQ domain | domain-containing proteinC5L36_0B01570 covers 100% of it on the same strand
MATA1core_MAT310491-311300 -annotatedC5L36_0B01580Homeodomain | domain-containing proteinC5L36_0B01580 covers 100% of it on the same strand