PcomataTmat Podospora comata strain T mat+

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, LR026964:7211104-7225453

MATPredictFungiDBCOX13 (flanking_conserved) LR026964:7211104-7211884 - identity 72.9COX13APN2 (flanking_conserved) LR026964:7212562-7214835 + identity 84.1APN2MAT1-2-1 (core_MAT) LR026964:7216737-7218050 - identity 55.8MAT1-2-1SLA2 (flanking_conserved) LR026964:7222074-7225453 - identity 81.6SLA2PODCO_120550 7204366-7206925 +: PA domain | Ring finger domain | domain-containing proteinPODCO_120550PODCO_120560 7208024-7210543 +: Putative anaphase-promoting complex subunit 5PODCO_120560PODCO_120570 7211104-7211884 -: Putative cytochrome c oxidase polypeptide VIaPODCO_120570PODCO_120580 7212562-7214835 +: Putative DNA-(apurinic or apyrimidinic site) lyase 2PODCO_120580PODCO_120590 7216737-7218050 -: MAT+ sexual cell fertilization-promoting factor encoded by the FPR1 genePODCO_120590PODCO_120600 7222074-7225453 -: Putative endocytosis protein end4PODCO_120600PODCO_120610 7226419-7227519 +: Putative autophagy-related protein 3PODCO_120610PODCO_120620 7228076-7229188 -: Putative pre-mRNA-splicing factor cwc-24PODCO_1206207208 kb7212 kb7216 kb7220 kb7224 kb7228 kbLR026964
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved7211104-7211884 -annotatedPODCO_120570Putative cytochrome c oxidase polypeptide VIaPODCO_120570 covers 100% of it on the same strand
APN2flanking_conserved7212562-7214835 +annotatedPODCO_120580Putative DNA-(apurinic or apyrimidinic site) lyase 2PODCO_120580 covers 100% of it on the same strand
MAT1-2-1core_MAT7216737-7218050 -annotatedPODCO_120590MAT+ sexual cell fertilization-promoting factor encoded by the FPR1 genePODCO_120590 covers 100% of it on the same strand
SLA2flanking_conserved7222074-7225453 -annotatedPODCO_120600Putative endocytosis protein end4PODCO_120600 covers 100% of it on the same strand