MATPredict · mating-type report

PcariniiB80

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:37 UTC by MATPredict 0.8.1

Result

Mating type

Mmedium confidence

Called loci 1

M PM family · Ascomycota

medium confidence
Gene order of the M locus on LFVZ01000013M locus: genes from left to right on LFVZ01000013, 71,357 to 80,957: matPi (core MAT gene, minus strand); matMc (core MAT gene, minus strand).72 kb74 kb76 kb78 kb80 kb← 70.9 kb more to contig endcalled locusmatPi: core MAT gene, 71,357–72,049 (-), identity 100.0%, search hit onlymatPimatMc: core MAT gene, 80,259–80,957 (-), identity 100.0%, search hit onlymatMc
Gene order on LFVZ01000013. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on LFVZ01000013, 70,878 to 81,437T552_02828 70,308-70,927 (+): Prefoldin subunit | domain-containing proteinT552_02828T552_02829 71,312-72,094 (-): Homeobox KN domain | domain-containing proteinT552_02829T552_04182 72,274-76,029 (+): ATP-dependent chaperone ClpBT552_04182T552_04183 75,653-79,812 (+): ANTH domain | I/LWEQ domain | domain-containing proteinT552_04183T552_02831 80,213-81,003 (-): HMG (high mobility group) box | domain-containing proteinT552_02831
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • search hit only
Location
LFVZ01000013:71,357–80,957 · 9.6 kb
Cross-lineage class
MAT1-2
Own genes
LFVZ01000013:71,357–80,957 · 9.6 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
2 of 2 gene hits
Nearest contig end
71.4 kb
Region (samtools)
LFVZ01000013:71357-80957
Idiomorph scores
  • M 459.0
  • P 457.0

Margin over the next idiomorph: 2.0

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
matPicore MAThit onlyDIAMOND, proteome100.0cov 100.0%4.6e-170457 bits71,357–72,049 -–4754_b80_PM_combinedT552_02829
matMccore MAThit onlyDIAMOND, proteome100.0cov 100.0%9.2e-171459 bits80,259–80,957 -–4754_b80_PM_combinedT552_02831
matMiexpected, not found–
matPcnot searchable: no reference protein in the database–

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
PMLFVZ01000005:398,788–398,910MmatMi0fewer than 2 genes could be modelled

Provenance

Genome file
PcariniiB80.genome.fasta
Assembly
62 contigs · 7.7 Mb · N50 465.1 kb
Genome SHA-256
bbc62542ead8b7cd823bcc8c79147fe99da0c0f1846f6d9e6081da8277bf5be7
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 44281, 'routing_taxid_rank': 'family', 'flags': ['short_genome', 'identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 44281', 'routed_by': 'family taxid 44281 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:37:40Z
Run time
13 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits