PcanisCanA Pneumocystis canis CanA

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_PM_0: P Ascomycota:PM, confidence medium, JACEFK010000014:206624-216433

MATPredictFungiDBmatPi (core_MAT) JACEFK010000014:206624-207319 - identity 86.6matPimatMc (core_MAT) JACEFK010000014:215711-216433 - identity 77.0matMcPCANB_000841 201563-205331 -: unspecified productPCANB_000841PCANB_000842 205485-206019 +: Prefoldin subunit | domain-containing proteinPCANB_000842PCANB_000843 206624-207319 -: Homeobox KN domain | domain-containing proteinPCANB_000843PCANB_000844 207560-215099 +: ANTH domain | AAA domain (Cdc48 subfamily) | C-terminal, D2-small domain, of ClpB protein | ATPase family associated with various cellular activities (AAA) | I/LWEQ domain | Clp amino terminal domain, pathogenicity island component | AAA lid domain | domain-containing proteinPCANB_000844PCANB_000845 215711-216433 -: HMG (high mobility group) box | domain-containing proteinPCANB_000845PCANB_000846 216484-217458 -: unspecified productPCANB_000846PCANB_000847 217646-218487 +: Homeodomain | domain-containing proteinPCANB_000847PCANB_000848 219406-220566 +: HMG (high mobility group) box | domain-containing proteinPCANB_000848PCANB_000849 221183-224024 +: Anaphase-promoting complex subunit 5 | domain-containing proteinPCANB_000849202 kb204 kb206 kb208 kb210 kb212 kb214 kb216 kb218 kb220 kbJACEFK010000014
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
matPicore_MAT206624-207319 -annotatedPCANB_000843Homeobox KN domain | domain-containing proteinPCANB_000843 covers 100% of it on the same strand
matMccore_MAT215711-216433 -annotatedPCANB_000845HMG (high mobility group) box | domain-containing proteinPCANB_000845 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
PCANB_000844207560-215099 +ANTH domain | AAA domain (Cdc48 subfamily) | C-terminal, D2-small domain, of ClpB protein | ATPase family associated with various cellular activities (AAA) | I/LWEQ domain | Clp amino terminal domain, pathogenicity island component | AAA lid domain | domain-containing protein