PattinorumCBS131958 Phialophora attinorum CBS 131958

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, LFJN01000005:433875-444391

MATPredictFungiDBCOX13 (flanking_conserved) LFJN01000005:433875-434427 - identity 83.7COX13APN2 (flanking_conserved) LFJN01000005:434736-436585 + identity 95.5APN2MAT1-2-1 (core_MAT) LFJN01000005:437907-439069 - identity 69.1MAT1-2-1SLA2 (flanking_conserved) LFJN01000005:441178-444391 + identity 85.5SLA2AB675_6812 429040-430034 +: Complex I intermediate-associated protein 30, mitochondrialAB675_6812AB675_6813 430107-431077 -: Phosphoribosylaminoimidazole-succinocarboxamide synthaseAB675_6813AB675_6814 431398-433690 +: Anaphase-promoting complex subunit 5AB675_6814AB675_6815 433875-434427 -: Cytochrome c oxidase subunit 6A, mitochondrialAB675_6815AB675_6816 434736-436585 +: DNA-(apurinic or apyrimidinic site) lyase 2AB675_6816AB675_6817 437907-439069 -: Mating-type protein a-1AB675_6817AB675_6818 441178-444391 +: Endocytosis protein end4AB675_6818AB675_6819 444607-445356 -: XM_018147139.1AB675_6819AB675_6820 446260-449342 -: putative PH domain-containing proteinAB675_6820430 kb432 kb434 kb436 kb438 kb440 kb442 kb444 kb446 kb448 kbLFJN01000005
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved433875-434427 -annotatedAB675_6815Cytochrome c oxidase subunit 6A, mitochondrialAB675_6815 covers 100% of it on the same strand
APN2flanking_conserved434736-436585 +annotatedAB675_6816DNA-(apurinic or apyrimidinic site) lyase 2AB675_6816 covers 100% of it on the same strand
MAT1-2-1core_MAT437907-439069 -annotatedAB675_6817Mating-type protein a-1AB675_6817 covers 100% of it on the same strand
SLA2flanking_conserved441178-444391 +annotatedAB675_6818Endocytosis protein end4AB675_6818 covers 100% of it on the same strand