PanserinaSmat Podospora anserina S mat+

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CU633445:73400-87562

MATPredictFungiDBCOX13 (flanking_conserved) CU633445:73400-74228 - identity 74.1COX13APN2 (flanking_conserved) CU633445:74909-77182 + identity 84.1APN2MAT1-2-1 (core_MAT) CU633445:78879-80192 - identity 55.8MAT1-2-1SLA2 (flanking_conserved) CU633445:84183-87562 - identity 81.0SLA2PODANS_1_20550 66645-69228 +: PA domain | Ring finger domain | domain-containing proteinPODANS_1_20550PODANS_1_20560 70380-72899 +: Anaphase-promoting complex subunit 5 | domain-containing proteinPODANS_1_20560PODANS_1_20570 73400-74228 -: Cytochrome c oxidase subunit VIa | domain-containing proteinPODANS_1_20570PODANS_1_20580 74909-77182 +: DNA-(apurinic or apyrimidinic site) endonuclease 2PODANS_1_20580PODANS_1_20590 78879-80192 -: HMG (high mobility group) box | domain-containing proteinPODANS_1_20590PODANS_1_20600 84183-87562 -: ANTH domain | I/LWEQ domain | domain-containing proteinPODANS_1_20600PODANS_1_20610 88502-89602 +: Autophagocytosis associated protein, active-site domain | domain-containing proteinPODANS_1_20610PODANS_1_20620 90182-91706 -: Zinc finger, C3HC4 type (RING finger) | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | domain-containing proteinPODANS_1_2062072 kb76 kb80 kb84 kb88 kb92 kbCU633445
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved73400-74228 -annotatedPODANS_1_20570Cytochrome c oxidase subunit VIa | domain-containing proteinPODANS_1_20570 covers 100% of it on the same strand
APN2flanking_conserved74909-77182 +annotatedPODANS_1_20580DNA-(apurinic or apyrimidinic site) endonuclease 2PODANS_1_20580 covers 100% of it on the same strand
MAT1-2-1core_MAT78879-80192 -annotatedPODANS_1_20590HMG (high mobility group) box | domain-containing proteinPODANS_1_20590 covers 100% of it on the same strand
SLA2flanking_conserved84183-87562 -annotatedPODANS_1_20600ANTH domain | I/LWEQ domain | domain-containing proteinPODANS_1_20600 covers 100% of it on the same strand