OpiceaeUAMH11346 Ophiostoma piceae UAMH 11346

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, KE148160:377999-415153

MATPredictFungiDBAPN2 (flanking_conserved) KE148160:377999-380603 + identity 63.6APN2COX13 (flanking_conserved) KE148160:385195-385881 + identity 64.4COX13MAT1-2-1 (core_MAT) KE148160:406396-407379 - identity 75.9MAT1-2-1MAT1-1-1 (core_MAT) KE148160:408629-409863 + identity 39.2MAT1-1-1SLA2 (flanking_conserved) KE148160:411760-415153 - identity 97.4SLA2F503_03617 372894-373586 +: unspecified productF503_03617F503_03618 373927-377007 +: unspecified productF503_03618F503_03619 377999-380603 +: dna lyaseF503_03619F503_03620 381081-382891 -: ring-9 proteinF503_03620F503_03621 385195-385881 +: cytochrome c oxidase subunitF503_03621F503_03622 386827-390055 -: unspecified productF503_03622F503_03623 399269-401086 +: unspecified productF503_03623F503_03624 401132-402100 +: unspecified productF503_03624F503_03625 406396-407379 -: mat-1-2F503_03625F503_03626 408629-409863 +: Mat1-1-1F503_03626F503_03627 411760-415153 -: cytoskeleton assembly control protein sla2F503_03627F503_03628 415910-420997 +: dna polymerase zeta catalyticF503_03628376 kb380 kb384 kb388 kb392 kb396 kb400 kb404 kb408 kb412 kb416 kb420 kbKE148160
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved377999-380603 +annotatedF503_03619dna lyaseF503_03619 covers 100% of it on the same strand
COX13flanking_conserved385195-385881 +annotatedF503_03621cytochrome c oxidase subunitF503_03621 covers 100% of it on the same strand
MAT1-2-1core_MAT406396-407379 -annotatedF503_03625mat-1-2F503_03625 covers 100% of it on the same strand
MAT1-1-1core_MAT408629-409863 +annotatedF503_03626Mat1-1-1F503_03626 covers 100% of it on the same strand
SLA2flanking_conserved411760-415153 -annotatedF503_03627cytoskeleton assembly control protein sla2F503_03627 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
F503_03620381081-382891 -ring-9 protein
F503_03622386827-390055 -unspecified product
F503_03623399269-401086 +unspecified product
F503_03624401132-402100 +unspecified product