NtetraspermaFGSC2508 Neurospora tetrasperma FGSC 2508

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, GL891382:1753450-1771985

MATPredictFungiDBCOX13 (flanking_conserved) GL891382:1753450-1754381 - identity 72.6COX13APN2 (flanking_conserved) GL891382:1755302-1757394 + identity 81.8APN2MAT1-1-3 (core_MAT) GL891382:1759015-1760151 - identity 97.2MAT1-1-3MAT1-1-2 (core_MAT) GL891382:1760900-1762246 + identity 94.6MAT1-1-2MAT1-1-1 (core_MAT) GL891382:1762645-1763640 + identity 98.0MAT1-1-1SLA2 (flanking_conserved) GL891382:1768647-1771985 - identity 80.2SLA2NEUTE1DRAFT_125443 1746430-1749505 +: Ring finger domain | PA domain | domain-containing proteinNEUTE1DRAFT_125443NEUTE1DRAFT_149499 1750301-1752961 +: Anaphase-promoting complex subunit 5 | domain-containing proteinNEUTE1DRAFT_149499NEUTE1DRAFT_118541 1753181-1754530 -: Cytochrome c oxidase subunit VIa | domain-containing proteinNEUTE1DRAFT_118541NEUTE1DRAFT_149501 1755302-1757684 +: DNA-(apurinic or apyrimidinic site) endonuclease 2NEUTE1DRAFT_149501NEUTE1DRAFT_50737 1759015-1760151 -: mating type proteinNEUTE1DRAFT_50737NEUTE1DRAFT_104830 1760900-1762246 +: mating-type protein A-2 (Mt A-2)NEUTE1DRAFT_104830NEUTE1DRAFT_89543 1762645-1763863 +: mating type proteinNEUTE1DRAFT_89543NEUTE1DRAFT_104832 1768139-1768339 -: hypothetical proteinNEUTE1DRAFT_104832NEUTE1DRAFT_70857 1768397-1771986 -: ANTH domain | I/LWEQ domain | domain-containing proteinNEUTE1DRAFT_70857NEUTE1DRAFT_89550 1773129-1774821 +: Autophagocytosis associated protein, active-site domain | domain-containing proteinNEUTE1DRAFT_89550NEUTE1DRAFT_14975 1775396-1776588 -: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | zinc-RING finger domain | domain-containing proteinNEUTE1DRAFT_149751752 kb1756 kb1760 kb1764 kb1768 kb1772 kb1776 kbGL891382
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1753450-1754381 -annotatedNEUTE1DRAFT_118541Cytochrome c oxidase subunit VIa | domain-containing proteinNEUTE1DRAFT_118541 covers 100% of it on the same strand
APN2flanking_conserved1755302-1757394 +annotatedNEUTE1DRAFT_149501DNA-(apurinic or apyrimidinic site) endonuclease 2NEUTE1DRAFT_149501 covers 100% of it on the same strand
MAT1-1-3core_MAT1759015-1760151 -annotatedNEUTE1DRAFT_50737mating type proteinNEUTE1DRAFT_50737 covers 100% of it on the same strand
MAT1-1-2core_MAT1760900-1762246 +annotatedNEUTE1DRAFT_104830mating-type protein A-2 (Mt A-2)NEUTE1DRAFT_104830 covers 100% of it on the same strand
MAT1-1-1core_MAT1762645-1763640 +annotatedNEUTE1DRAFT_89543mating type proteinNEUTE1DRAFT_89543 covers 100% of it on the same strand
SLA2flanking_conserved1768647-1771985 -annotatedNEUTE1DRAFT_70857ANTH domain | I/LWEQ domain | domain-containing proteinNEUTE1DRAFT_70857 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
NEUTE1DRAFT_1048321768139-1768339 -hypothetical protein